Variant report

Variant	rs26987
Chromosome Location	chr5:112781219-112781220
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1517208	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1517210	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs154039	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs154040	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs164251	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs171181	0.87[ASN][1000 genomes]
rs173903	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1845290	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs190453	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2431548	0.81[ASN][1000 genomes]
rs2434664	0.87[ASN][1000 genomes]
rs255856	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs255858	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs255863	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs255867	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs255874	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs26960	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs26983	0.81[AMR][1000 genomes]
rs26985	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs26988	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs27566	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs27700	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs348927	0.83[ASN][1000 genomes]
rs348933	0.81[ASN][1000 genomes]
rs348949	0.83[ASN][1000 genomes]
rs348950	0.83[ASN][1000 genomes]
rs348953	0.83[ASN][1000 genomes]
rs36612	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3857435	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs406288	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs423089	0.85[ASN][1000 genomes]
rs4398627	0.84[AMR][1000 genomes]
rs459428	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs461034	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs463216	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs465898	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs466564	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4705813	0.80[AMR][1000 genomes]
rs6594711	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs675353	0.89[ASN][1000 genomes]
rs6869097	0.80[AMR][1000 genomes]
rs6875238	0.80[AMR][1000 genomes]
rs6879612	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7702120	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7727449	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112762000-112786000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:112764600-112786400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr5:112764800-112786800	Weak transcription	NHEK	skin
4	chr5:112770400-112783400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr5:112770600-112786800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr5:112780400-112787400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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