Variant report

Variant	rs6879612
Chromosome Location	chr5:112692095-112692096
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:112690790..112692381-chr5:112700425..112702071,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10067046	0.82[AMR][1000 genomes]
rs1517208	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1517210	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs154039	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs154040	0.92[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs164253	0.82[AMR][1000 genomes]
rs173903	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1845290	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2165928	0.82[AMR][1000 genomes]
rs255856	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs255858	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs255863	0.91[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs255867	0.88[AMR][1000 genomes]
rs255874	0.92[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs26960	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs26983	0.90[AMR][1000 genomes]
rs26985	0.85[ASN][1000 genomes]
rs26987	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs26988	0.84[ASN][1000 genomes]
rs27566	0.93[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs27718	0.81[AMR][1000 genomes]
rs36612	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3857435	0.93[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4324667	0.83[AMR][1000 genomes]
rs466564	0.82[ASN][1000 genomes]
rs4705813	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs485210	0.83[AMR][1000 genomes]
rs6594700	0.80[AMR][1000 genomes]
rs6594711	0.93[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6869097	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6875238	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7702120	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv882719	chr5:112568212-112706511	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv949165	chr5:112615626-112730216	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112667200-112693400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:112682000-112700000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr5:112689000-112693200	Weak transcription	Left Ventricle	heart
4	chr5:112690000-112693400	Weak transcription	Fetal Heart	heart
5	chr5:112690200-112693200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:112690200-112693800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr5:112690200-112695400	Weak transcription	HMEC	breast
8	chr5:112690200-112700000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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