Variant report

Variant	rs3857437
Chromosome Location	chr5:112841630-112841631
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:112841520..112842123-chr7:55086415..55086943,2	HCT-116	colon:

Variant related genes	Relation type
ENSG00000146648	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10036300	0.92[JPT][hapmap]
rs10045444	0.80[EUR][1000 genomes]
rs10071966	0.90[CHB][hapmap]
rs1017209	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs1132528	0.89[CHB][hapmap]
rs12659978	0.90[CHB][hapmap]
rs1593953	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs164251	0.81[AMR][1000 genomes]
rs171181	0.85[AMR][1000 genomes]
rs1820056	0.85[CHB][hapmap];0.80[ASN][1000 genomes]
rs182987	0.87[AMR][1000 genomes]
rs190453	0.81[AMR][1000 genomes]
rs2303717	0.87[CHB][hapmap]
rs2431548	0.87[AMR][1000 genomes]
rs2434664	0.85[AMR][1000 genomes]
rs2434665	0.82[AMR][1000 genomes]
rs27700	0.81[AMR][1000 genomes]
rs34075952	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs348933	0.87[AMR][1000 genomes]
rs348949	0.85[AMR][1000 genomes]
rs348950	0.85[AMR][1000 genomes]
rs348953	0.85[AMR][1000 genomes]
rs3763139	0.90[CHB][hapmap]
rs3906371	1.00[CEU][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3909887	0.86[AFR][1000 genomes]
rs406288	0.82[AMR][1000 genomes]
rs423089	0.84[CHB][hapmap];0.85[AMR][1000 genomes]
rs4324667	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4398627	0.85[JPT][hapmap]
rs4415069	0.85[CHB][hapmap]
rs459428	0.83[AMR][1000 genomes]
rs463216	0.82[AMR][1000 genomes]
rs4639215	0.89[CHB][hapmap]
rs465898	0.83[AMR][1000 genomes]
rs4705830	0.85[CHB][hapmap]
rs4705831	0.90[CHB][hapmap]
rs675353	0.85[AMR][1000 genomes]
rs6881976	0.90[CHB][hapmap]
rs7706958	0.84[JPT][hapmap]
rs7713348	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7727449	0.82[CHB][hapmap];0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs7730802	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9326895	0.89[CHB][hapmap]
rs9552	0.89[CHB][hapmap]
rs9654519	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112840200-112842200	Enhancers	HMEC	breast
2	chr5:112841400-112847800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:112841400-112848000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr5:112841600-112844200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr5:112841600-112847000	Weak transcription	NHEK	skin

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