Variant report

Variant	rs1017209
Chromosome Location	chr5:112844988-112844989
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:112842312..112845098-chr5:112847464..112851049,4	K562	blood:
2	chr5:112823115..112825891-chr5:112843466..112845489,2	MCF-7	breast:
3	chr5:112842488..112845098-chr5:112846749..112850121,5	K562	blood:

Variant related genes	Relation type
ENSG00000171444	Chromatin interaction
ENSG00000047188	Chromatin interaction

Extended variants
information (count: 180 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:179)

rs_ID	r²[population]
rs10036298	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10036300	0.85[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10038632	0.83[ASN][1000 genomes]
rs10039853	0.84[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10040203	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10040430	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10040516	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10042563	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10043066	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10046057	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10052077	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10053582	0.93[CEU][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10061552	0.84[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs10063008	0.84[ASN][1000 genomes]
rs10065616	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10071816	0.84[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap];0.83[MEX][hapmap];0.89[ASN][1000 genomes]
rs10072547	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10076131	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10079603	0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs10079758	0.89[ASN][1000 genomes]
rs10079895	0.84[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10079973	0.84[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10080096	0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1035888	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10477495	1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10477497	0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10477498	0.89[ASN][1000 genomes]
rs10477499	1.00[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10477500	1.00[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10478126	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10478127	0.83[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10478129	1.00[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10478132	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1052896	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1080858	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11241210	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11241211	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11241212	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11241214	0.84[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.92[JPT][hapmap];0.87[MEX][hapmap];0.85[ASN][1000 genomes]
rs11241215	0.94[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11742968	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11747924	0.83[CEU][hapmap]
rs11749931	0.84[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.91[JPT][hapmap];0.87[MEX][hapmap];0.89[ASN][1000 genomes]
rs11750449	0.83[EUR][1000 genomes]
rs11750488	0.86[EUR][1000 genomes]
rs11956399	0.84[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12186798	0.84[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12514105	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12516911	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12519315	0.83[AMR][1000 genomes]
rs12523145	0.86[CHB][hapmap];0.88[CHD][hapmap];0.91[MEX][hapmap];0.88[AMR][1000 genomes]
rs12652172	0.89[ASN][1000 genomes]
rs12654189	0.89[ASN][1000 genomes]
rs12660001	0.84[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs13359625	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13359648	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13359652	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13359703	0.85[ASN][1000 genomes]
rs13362066	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1549628	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17135766	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17135776	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1820059	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1833680	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1833681	0.95[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.96[TSI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1862315	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1970798	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2115216	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2162842	0.89[ASN][1000 genomes]
rs2162847	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2288449	0.84[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.83[ASN][1000 genomes]
rs2416319	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28558374	0.89[ASN][1000 genomes]
rs28848005	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2900072	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34514665	0.92[ASN][1000 genomes]
rs34864074	0.92[ASN][1000 genomes]
rs35162738	0.92[ASN][1000 genomes]
rs35526509	0.88[ASN][1000 genomes]
rs3763138	1.00[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3763140	0.84[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs3815911	0.83[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs3842917	0.89[CEU][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3857437	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs3906371	0.84[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs3906538	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3909887	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3936061	0.84[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.91[JPT][hapmap];0.87[MEX][hapmap];0.92[ASN][1000 genomes]
rs4122547	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4132093	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4132094	0.86[ASN][1000 genomes]
rs4334877	0.92[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs4588592	0.84[CEU][hapmap];0.84[ASN][1000 genomes]
rs4705552	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4705553	0.91[ASN][1000 genomes]
rs4705555	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4705556	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4705557	0.84[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4705821	0.81[GIH][hapmap];0.91[JPT][hapmap];0.82[MEX][hapmap]
rs4705823	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4705825	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4705827	1.00[CEU][hapmap];0.86[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.90[TSI][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4705828	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4705832	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4705833	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56030143	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56206672	0.83[ASN][1000 genomes]
rs57134656	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58044020	0.89[ASN][1000 genomes]
rs58391392	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60265545	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60871281	0.89[ASN][1000 genomes]
rs6594718	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6594719	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6594720	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6594721	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.96[TSI][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6594729	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6594732	1.00[CEU][hapmap];0.86[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.96[TSI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6594733	1.00[CEU][hapmap];0.86[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.96[TSI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6594734	0.84[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.89[ASN][1000 genomes]
rs6594735	0.86[CHB][hapmap];0.88[CHD][hapmap];0.95[MEX][hapmap]
rs6594738	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs67915940	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6865809	1.00[CEU][hapmap];0.89[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6867502	0.83[ASN][1000 genomes]
rs6876448	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6877432	0.92[CHB][hapmap];0.97[CHD][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs6877466	0.83[ASN][1000 genomes]
rs6877834	0.83[ASN][1000 genomes]
rs6878282	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6878355	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6878900	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6880447	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6883383	0.84[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap];0.87[MEX][hapmap];0.84[ASN][1000 genomes]
rs6883557	0.84[ASN][1000 genomes]
rs6884704	0.94[CEU][hapmap]
rs6886199	0.87[CHD][hapmap];0.95[MEX][hapmap]
rs6886628	0.84[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.85[ASN][1000 genomes]
rs6887816	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6889501	0.89[ASN][1000 genomes]
rs6889574	0.84[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.89[ASN][1000 genomes]
rs6889783	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6898425	0.94[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72805422	0.89[ASN][1000 genomes]
rs7349799	0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs754573	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7701913	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7704170	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7705562	0.84[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs7706215	0.89[ASN][1000 genomes]
rs7706796	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7706958	0.84[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7707443	0.82[CEU][hapmap]
rs7707895	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7709110	0.83[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.81[ASN][1000 genomes]
rs7711078	0.94[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7711211	0.89[CEU][hapmap];0.86[CHB][hapmap];0.97[CHD][hapmap];0.92[JPT][hapmap];0.87[MEX][hapmap];0.89[ASN][1000 genomes]
rs7711367	0.84[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.89[ASN][1000 genomes]
rs7713038	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7713348	0.81[AFR][1000 genomes]
rs7713451	1.00[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.96[TSI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7713846	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7715601	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7717644	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7722918	0.83[ASN][1000 genomes]
rs7723108	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7729306	1.00[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.96[TSI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7730532	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7730557	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7730801	0.91[JPT][hapmap]
rs7730949	1.00[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.93[TSI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7732310	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7737023	0.84[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs919304	0.84[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.91[JPT][hapmap];0.87[MEX][hapmap];0.84[ASN][1000 genomes]
rs929774	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9326893	0.84[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs9326897	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9654519	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9885245	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs1017209	YTHDC2	cis	multi-tissue	Pritchard
rs1017209	YTHDC2	cis	cerebellum	SCAN
rs1017209	CDO1	cis	cerebellum	SCAN
rs1017209	YTHDC2	cis	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112841400-112847800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:112841400-112848000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr5:112841600-112847000	Weak transcription	NHEK	skin
4	chr5:112844200-112845000	Enhancers	HMEC	breast
5	chr5:112844200-112845400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr5:112844400-112845000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr5:112844600-112845200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr5:112844600-112848000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr5:112844800-112845200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr5:112844800-112848800	Weak transcription	Muscle Satellite Cultured Cells	--

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