Variant report

Variant	rs6880447
Chromosome Location	chr5:112831387-112831388
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:112784529..112786185-chr5:112829996..112832714,2	K562	blood:
2	chr5:112826945..112828680-chr5:112831209..112832875,2	MCF-7	breast:

Extended variants
information (count: 215 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:214)

rs_ID	r²[population]
rs10036298	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10036300	0.85[CHB][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10038632	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10039853	0.84[CEU][hapmap];0.92[CHB][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs10040203	1.00[CEU][hapmap];0.92[CHB][hapmap];0.82[JPT][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10040430	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10040516	0.86[EUR][1000 genomes]
rs10042563	0.86[EUR][1000 genomes]
rs10043066	0.86[EUR][1000 genomes]
rs10046057	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10052077	0.86[EUR][1000 genomes]
rs10053582	0.93[CEU][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10061552	0.84[CEU][hapmap];0.92[CHB][hapmap];0.85[ASN][1000 genomes]
rs10063008	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10065616	0.86[EUR][1000 genomes]
rs10071816	0.84[CEU][hapmap];0.86[CHB][hapmap];0.91[MEX][hapmap];0.87[ASN][1000 genomes]
rs10072547	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10076131	0.86[EUR][1000 genomes]
rs10079603	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10079758	0.87[ASN][1000 genomes]
rs10079895	0.84[CEU][hapmap];0.92[CHB][hapmap];0.87[ASN][1000 genomes]
rs10079973	0.84[CEU][hapmap];0.92[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs10080096	0.92[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs1017209	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.91[MEX][hapmap];0.96[TSI][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1035888	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10477495	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10477497	0.92[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs10477498	0.87[ASN][1000 genomes]
rs10477499	1.00[CEU][hapmap];0.92[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10477500	1.00[CEU][hapmap];0.92[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10478126	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10478127	0.83[CEU][hapmap];0.92[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs10478129	1.00[CEU][hapmap];0.92[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10478132	1.00[CEU][hapmap];0.92[CHB][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1052896	1.00[CEU][hapmap];0.91[CHB][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1057827	0.80[AFR][1000 genomes]
rs1080858	0.86[EUR][1000 genomes]
rs11241210	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11241211	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11241212	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11241214	0.84[CEU][hapmap];0.92[CHB][hapmap];0.93[CHD][hapmap];0.95[MEX][hapmap];0.85[ASN][1000 genomes]
rs11241215	0.94[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11742968	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11747924	0.83[CEU][hapmap]
rs11749931	0.84[CEU][hapmap];0.92[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];0.87[ASN][1000 genomes]
rs11750449	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11750488	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11956399	0.84[CEU][hapmap];0.92[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs12186798	0.84[CEU][hapmap];0.92[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs12514105	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12516911	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12523145	0.86[CHB][hapmap];0.84[CHD][hapmap];0.84[MEX][hapmap]
rs12652172	0.87[ASN][1000 genomes]
rs12654189	0.87[ASN][1000 genomes]
rs12660001	0.84[CEU][hapmap];0.92[CHB][hapmap];0.87[ASN][1000 genomes]
rs13359625	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13359648	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13359652	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13359703	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13362066	1.00[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1549628	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs168365	0.82[AFR][1000 genomes]
rs168366	0.83[AFR][1000 genomes]
rs171180	0.81[AFR][1000 genomes]
rs17135766	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17135776	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1820059	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1833680	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1833681	0.83[ASW][hapmap];0.95[CEU][hapmap];0.92[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1862315	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs191553	0.81[AFR][1000 genomes]
rs1970798	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2115216	0.85[EUR][1000 genomes]
rs2162842	0.87[ASN][1000 genomes]
rs2162847	0.85[EUR][1000 genomes]
rs2248930	0.89[LWK][hapmap];1.00[YRI][hapmap]
rs2288449	0.84[CEU][hapmap];0.92[CHB][hapmap];0.93[CHD][hapmap];0.82[JPT][hapmap];0.95[MEX][hapmap];0.83[ASN][1000 genomes]
rs2416319	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs26991	0.89[YRI][hapmap];0.81[AMR][1000 genomes]
rs28558374	0.87[ASN][1000 genomes]
rs28848005	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2900072	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34514665	0.90[ASN][1000 genomes]
rs34864074	0.90[ASN][1000 genomes]
rs348924	0.82[AFR][1000 genomes]
rs348925	0.81[AFR][1000 genomes]
rs348928	0.89[LWK][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs348929	0.96[YRI][hapmap];0.83[AFR][1000 genomes]
rs348930	0.83[AFR][1000 genomes]
rs348931	0.88[YRI][hapmap];0.80[AFR][1000 genomes]
rs348932	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs348938	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs348940	0.85[AFR][1000 genomes]
rs348944	0.83[AFR][1000 genomes]
rs348947	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs348948	0.82[AFR][1000 genomes]
rs348952	0.83[AFR][1000 genomes]
rs348954	0.83[AFR][1000 genomes]
rs348955	0.83[AFR][1000 genomes]
rs348956	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs348957	0.83[AFR][1000 genomes]
rs348958	0.83[AFR][1000 genomes]
rs348960	0.83[AFR][1000 genomes]
rs348961	0.89[LWK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs348962	0.89[LWK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs348963	0.89[LWK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs35162738	0.90[ASN][1000 genomes]
rs35526509	0.86[ASN][1000 genomes]
rs364738	0.81[AFR][1000 genomes]
rs367943	0.89[LWK][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs3763138	1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];0.96[TSI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3763140	0.84[CEU][hapmap];0.92[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs3815911	0.83[CEU][hapmap];0.92[CHB][hapmap];0.93[CHD][hapmap];0.82[ASN][1000 genomes]
rs3842917	0.89[CEU][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs388363	0.81[AFR][1000 genomes]
rs3906538	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3909887	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3936061	0.84[CEU][hapmap];0.92[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];0.90[ASN][1000 genomes]
rs4122547	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4132093	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4132094	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4334877	0.92[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs444322	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs451425	0.81[AFR][1000 genomes]
rs455435	1.00[YRI][hapmap]
rs4588592	0.84[CEU][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs463167	1.00[YRI][hapmap]
rs463249	1.00[YRI][hapmap]
rs4705552	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4705553	0.89[ASN][1000 genomes]
rs4705555	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4705556	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4705557	0.84[CEU][hapmap];0.92[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs4705821	0.83[ASW][hapmap];0.81[GIH][hapmap];0.90[JPT][hapmap];0.83[LWK][hapmap];0.91[MEX][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap]
rs4705823	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4705825	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.91[MEX][hapmap];0.96[TSI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4705827	0.83[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.82[YRI][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4705828	1.00[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4705832	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4705833	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56030143	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56206672	0.83[ASN][1000 genomes]
rs57134656	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58044020	0.87[ASN][1000 genomes]
rs58391392	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60265545	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60871281	0.87[ASN][1000 genomes]
rs60914066	0.82[EUR][1000 genomes]
rs644154	1.00[YRI][hapmap]
rs6594718	0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6594719	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6594720	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6594721	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6594729	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6594732	0.83[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6594733	0.82[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6594734	0.84[CEU][hapmap];0.92[CHB][hapmap];0.93[CHD][hapmap];0.82[JPT][hapmap];0.95[MEX][hapmap];0.87[ASN][1000 genomes]
rs6594735	0.86[CHB][hapmap];0.84[CHD][hapmap];0.87[MEX][hapmap]
rs6594738	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs67915940	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6865809	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6867502	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6876448	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6877432	0.92[CHB][hapmap];0.93[CHD][hapmap];0.82[JPT][hapmap];0.87[MEX][hapmap];0.87[ASN][1000 genomes]
rs6877466	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6877834	0.83[ASN][1000 genomes]
rs6878282	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6878355	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6878900	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6883383	0.84[CEU][hapmap];0.92[CHB][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];0.83[TSI][hapmap];0.84[ASN][1000 genomes]
rs6883557	0.84[ASN][1000 genomes]
rs6884704	0.94[CEU][hapmap]
rs6886199	0.84[CHD][hapmap];0.87[MEX][hapmap]
rs6886628	0.84[CEU][hapmap];0.92[CHB][hapmap];0.93[CHD][hapmap];0.82[JPT][hapmap];0.95[MEX][hapmap];0.85[ASN][1000 genomes]
rs6887816	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6889501	0.87[ASN][1000 genomes]
rs6889574	0.84[CEU][hapmap];0.92[CHB][hapmap];0.93[CHD][hapmap];0.82[JPT][hapmap];0.95[MEX][hapmap];0.87[ASN][1000 genomes]
rs6889783	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6898425	0.94[CEU][hapmap];0.86[CHB][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72805422	0.87[ASN][1000 genomes]
rs7349799	0.91[CHB][hapmap];0.85[ASN][1000 genomes]
rs754573	0.87[EUR][1000 genomes]
rs7701913	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7704170	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7705562	0.84[CEU][hapmap];0.92[CHB][hapmap];0.82[JPT][hapmap]
rs7706215	0.87[ASN][1000 genomes]
rs7706796	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7706958	0.84[CEU][hapmap];0.92[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs7707443	0.82[CEU][hapmap]
rs7707895	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7709110	0.83[ASW][hapmap];0.82[JPT][hapmap];0.81[LWK][hapmap];0.91[MEX][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.83[ASN][1000 genomes]
rs7711078	0.94[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7711211	0.89[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];0.95[MEX][hapmap];0.87[ASN][1000 genomes]
rs7711367	0.84[CEU][hapmap];0.92[CHB][hapmap];0.93[CHD][hapmap];0.82[JPT][hapmap];0.95[MEX][hapmap];0.87[ASN][1000 genomes]
rs7713038	1.00[CEU][hapmap];0.92[CHB][hapmap];0.82[JPT][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7713451	1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7713846	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7715601	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7717644	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7722918	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7723108	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7729306	1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7730532	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7730557	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7730801	0.90[JPT][hapmap];0.96[YRI][hapmap]
rs7730949	1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap];0.96[TSI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7732310	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7737023	0.84[CEU][hapmap];0.92[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs919304	0.84[CEU][hapmap];0.92[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];0.84[ASN][1000 genomes]
rs929774	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[YRI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9326893	0.84[CEU][hapmap];0.92[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs9326897	0.86[EUR][1000 genomes]
rs9654519	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9885245	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs6880447	YTHDC2	cis	multi-tissue	Pritchard
rs6880447	YTHDC2	cis	cerebellum	SCAN
rs6880447	YTHDC2	cis	parietal	SCAN
rs6880447	CDO1	cis	cerebellum	SCAN
rs6880447	YTHDC2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112827200-112840400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:112831000-112831400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr5:112831000-112831400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr5:112831000-112831600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr5:112831000-112832000	Enhancers	HMEC	breast
6	chr5:112831000-112832000	Enhancers	HUVEC	blood vessel
7	chr5:112831000-112832000	Enhancers	NHEK	skin
8	chr5:112831200-112831600	Enhancers	NH-A	brain
9	chr5:112831200-112832000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Variant report

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