Variant report

Variant	rs7706796
Chromosome Location	chr5:112793950-112793951
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10036298	0.85[EUR][1000 genomes]
rs10040430	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10046057	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10063334	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10072547	0.80[EUR][1000 genomes]
rs1017209	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1035888	0.83[EUR][1000 genomes]
rs10477495	0.84[EUR][1000 genomes]
rs10477499	0.83[EUR][1000 genomes]
rs10477500	0.83[EUR][1000 genomes]
rs10478126	0.84[EUR][1000 genomes]
rs10478129	0.81[EUR][1000 genomes]
rs10478132	0.83[EUR][1000 genomes]
rs1052896	0.83[EUR][1000 genomes]
rs11241210	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11241211	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11241212	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11241215	0.82[EUR][1000 genomes]
rs11742968	0.83[EUR][1000 genomes]
rs11750449	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11750488	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12514105	0.81[EUR][1000 genomes]
rs12516911	0.81[EUR][1000 genomes]
rs13359625	0.82[EUR][1000 genomes]
rs13359648	0.82[EUR][1000 genomes]
rs13359652	0.82[EUR][1000 genomes]
rs13362066	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1549628	0.83[EUR][1000 genomes]
rs17135766	0.83[EUR][1000 genomes]
rs17135776	0.83[EUR][1000 genomes]
rs1820059	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1833680	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1833681	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1862315	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1970798	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2416319	0.80[AMR][1000 genomes]
rs255879	0.87[AMR][1000 genomes]
rs26991	0.89[AMR][1000 genomes]
rs28848005	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3763138	0.83[EUR][1000 genomes]
rs3842917	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3906538	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3909887	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4122547	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4132093	0.84[EUR][1000 genomes]
rs455435	0.81[AFR][1000 genomes]
rs458044	0.81[AFR][1000 genomes]
rs463167	0.81[AFR][1000 genomes]
rs463249	0.82[AFR][1000 genomes]
rs4705552	0.88[EUR][1000 genomes]
rs4705556	0.82[EUR][1000 genomes]
rs4705820	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4705821	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4705823	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4705825	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4705832	0.83[EUR][1000 genomes]
rs4705833	0.82[EUR][1000 genomes]
rs56030143	0.82[EUR][1000 genomes]
rs57134656	0.83[EUR][1000 genomes]
rs57530930	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs58391392	0.85[EUR][1000 genomes]
rs60265545	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60810500	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs644154	0.81[AFR][1000 genomes]
rs6594718	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6594719	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6594720	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6594721	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6594729	0.84[EUR][1000 genomes]
rs6594732	0.84[EUR][1000 genomes]
rs6594733	0.84[EUR][1000 genomes]
rs6594738	0.82[EUR][1000 genomes]
rs67915940	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6864278	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6865809	0.82[EUR][1000 genomes]
rs6876448	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6878282	0.81[EUR][1000 genomes]
rs6878355	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6878900	0.82[EUR][1000 genomes]
rs6880447	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6887816	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6889783	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6898425	0.84[EUR][1000 genomes]
rs7701913	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7704170	0.83[EUR][1000 genomes]
rs7709110	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs7713038	0.81[EUR][1000 genomes]
rs7713451	0.83[EUR][1000 genomes]
rs7713846	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7715601	0.83[EUR][1000 genomes]
rs7717644	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7729306	0.83[EUR][1000 genomes]
rs7730801	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7730949	0.82[EUR][1000 genomes]
rs7732310	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs929774	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9654519	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112786200-112810000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:112788000-112794200	Weak transcription	NHEK	skin
3	chr5:112788000-112808000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:112788200-112807600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr5:112791200-112795200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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