Variant report

Variant	rs1862315
Chromosome Location	chr5:112849801-112849802
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HEY1	chr5:112849142-112849834	HepG2	liver:	n/a	chr5:112849371-112849380 chr5:112849333-112849348
2	YY1	chr5:112849091-112849816	A549	lung:	n/a	chr5:112849278-112849287
3	POLR2A	chr5:112849075-112850323	GM12878	blood:	n/a	n/a
4	SMARCB1	chr5:112849180-112850066	Hela-S3	cervix:	n/a	n/a
5	POLR2A	chr5:112849106-112849988	GM18951	blood:	n/a	n/a
6	POLR2A	chr5:112849118-112850144	Hela-S3	cervix:	n/a	n/a
7	SIN3A	chr5:112849112-112850105	H1-hESC	embryonic stem cell:	n/a	chr5:112849359-112849372
8	PAX5	chr5:112849243-112850018	GM12892	blood:	n/a	chr5:112849339-112849348
9	TAF1	chr5:112849118-112850152	H1-neurons	neurons:	n/a	n/a
10	POLR2A	chr5:112849101-112850052	H1-hESC	embryonic stem cell:	n/a	n/a
11	YY1	chr5:112848995-112850000	SK-N-SH	brain:	n/a	chr5:112849278-112849287
12	MAX	chr5:112849026-112849847	ECC-1	luminal epithelium:	n/a	n/a
13	RAD21	chr5:112849001-112849823	H1-hESC	embryonic stem cell:	n/a	n/a
14	YY1	chr5:112849081-112849884	GM12878	blood:	n/a	chr5:112849278-112849287
15	UBTF	chr5:112849217-112850210	K562	blood:	n/a	n/a
16	TAF1	chr5:112849086-112850037	H1-hESC	embryonic stem cell:	n/a	n/a
17	MXI1	chr5:112848973-112850082	GM12878	blood:	n/a	n/a
18	POLR2A	chr5:112849228-112850039	H1-hESC	embryonic stem cell:	n/a	n/a
19	CREB1	chr5:112849184-112849860	A549	lung:	n/a	chr5:112849370-112849383
20	CREB1	chr5:112849059-112849935	GM12878	blood:	n/a	chr5:112849370-112849383
21	POLR2A	chr5:112849766-112849814	Hela-S3	cervix:	n/a	n/a
22	TBP	chr5:112849200-112850010	H1-hESC	embryonic stem cell:	n/a	n/a
23	POLR2A	chr5:112849124-112849964	GM15510	blood:	n/a	n/a
24	ZBTB7A	chr5:112849055-112849891	ECC-1	luminal epithelium:	n/a	chr5:112849833-112849844
25	HMGN3	chr5:112849167-112849947	K562	blood:	n/a	n/a
26	HA-E2F1	chr5:112849151-112850066	Hela-S3	cervix:	n/a	chr5:112849371-112849380 chr5:112849280-112849292 chr5:112849531-112849540 chr5:112849373-112849382 chr5:112849278-112849287
27	POLR2A	chr5:112849112-112850006	K562	blood:	n/a	n/a
28	YY1	chr5:112849098-112849916	GM12892	blood:	n/a	chr5:112849278-112849287
29	TAF1	chr5:112848951-112849960	ECC-1	luminal epithelium:	n/a	n/a
30	POLR2A	chr5:112849193-112850043	GM12878	blood:	n/a	n/a
31	POLR2A	chr5:112849084-112849868	ECC-1	luminal epithelium:	n/a	n/a
32	RAD21	chr5:112848824-112849807	SK-N-SH	brain:	n/a	n/a
33	MAX	chr5:112848939-112849816	A549	lung:	n/a	n/a
34	CTCF	chr5:112849700-112849850	GM12864	blood:	n/a	n/a
35	POLR2A	chr5:112849123-112849925	K562	blood:	n/a	n/a
36	POLR2A	chr5:112849072-112850267	GM12891	blood:	n/a	n/a
37	POLR2A	chr5:112849118-112850359	GM18505	blood:	n/a	n/a
38	MAX	chr5:112849106-112849803	NB4	blood:	n/a	n/a
39	MXI1	chr5:112849177-112850012	HepG2	liver:	n/a	n/a
40	TAF1	chr5:112849135-112850055	HepG2	liver:	n/a	n/a
41	POLR2A	chr5:112849087-112851800	IMR90	lung:	n/a	n/a
42	TEAD4	chr5:112849027-112850159	ECC-1	luminal epithelium:	n/a	n/a
43	YY1	chr5:112849063-112849972	H1-hESC	embryonic stem cell:	n/a	chr5:112849278-112849287
44	CBX3	chr5:112848883-112849810	HCT-116	colon:	n/a	n/a
45	POLR2A	chr5:112849060-112850085	GM12892	blood:	n/a	n/a
46	CHD2	chr5:112849164-112849812	K562	blood:	n/a	n/a
47	REST	chr5:112848815-112850431	H1-neurons	neurons:	n/a	n/a
48	REST	chr5:112849083-112849818	H1-neurons	neurons:	n/a	n/a
49	ZKSCAN1	chr5:112849070-112850099	Hela-S3	cervix:	n/a	n/a
50	POLR2A	chr5:112849001-112849952	PFSK-1	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr5:112538594..112540259-chr5:112848065..112850694,2	MCF-7	breast:
2	chr5:112849001..112849959-chr9:103114723..103115456,2	Hela-S3	cervix:
3	chr5:112849179..112849987-chrX:16887943..16888707,2	Hela-S3	cervix:
4	chr5:112823438..112825437-chr5:112848716..112850682,3	MCF-7	breast:
5	chr3:156876906..156878652-chr5:112849281..112850980,2	MCF-7	breast:

Variant related genes	Relation type
YTHDC2	TF binding region
ENSG00000171444	Chromatin interaction
ENSG00000163660	Chromatin interaction
ENSG00000136891	Chromatin interaction
ENSG00000102054	Chromatin interaction

Extended variants
information (count: 170 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:169)

rs_ID	r²[population]
rs10036298	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10036300	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10038632	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10039853	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10040203	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10040430	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10040516	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10042563	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10043066	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10046057	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10052077	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10053582	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10061552	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10063008	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10065616	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10071816	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10072547	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10076131	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10079603	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10079758	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10079895	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10079973	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10080096	0.92[ASN][1000 genomes]
rs1017209	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1035888	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10477495	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10477497	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10477498	0.92[ASN][1000 genomes]
rs10477499	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10477500	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10478126	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10478127	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10478129	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10478132	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1052896	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1080858	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11241210	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11241211	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11241212	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11241214	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11241215	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11742968	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11749931	0.92[ASN][1000 genomes]
rs11750449	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11750488	0.86[EUR][1000 genomes]
rs11956399	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12186798	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12514105	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12516911	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12519315	0.81[AMR][1000 genomes]
rs12523145	0.86[AMR][1000 genomes]
rs12652172	0.92[ASN][1000 genomes]
rs12654189	0.92[ASN][1000 genomes]
rs12660001	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13359625	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13359648	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13359652	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13359703	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs13362066	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1549628	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17135766	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17135776	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1820059	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1833680	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1833681	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1970798	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2115216	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2162842	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2162847	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2288449	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2416319	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28558374	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs28848005	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2900072	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34514665	0.95[ASN][1000 genomes]
rs34864074	0.95[ASN][1000 genomes]
rs35162738	0.95[ASN][1000 genomes]
rs35526509	0.91[ASN][1000 genomes]
rs3763138	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3763140	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs3815911	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3842917	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3906538	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3909887	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3936061	0.95[ASN][1000 genomes]
rs4122547	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4132093	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4132094	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4334877	0.95[ASN][1000 genomes]
rs4588592	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4705552	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4705553	0.94[ASN][1000 genomes]
rs4705555	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4705556	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4705557	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4705823	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4705825	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4705827	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4705828	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4705832	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4705833	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56030143	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56206672	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs57134656	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58044020	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs58391392	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60265545	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60871281	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs60914066	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6594718	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6594719	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6594720	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6594721	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6594729	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6594732	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6594733	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6594734	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6594738	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67915940	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6865809	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6867502	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6876448	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6877432	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6877466	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6877834	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6878282	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6878355	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6878900	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6880447	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6883383	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6883557	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6886628	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6887816	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6889501	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6889574	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6889783	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6898425	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72805422	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7349799	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs754573	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7701913	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7704170	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7706215	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7706796	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7706958	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7707895	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7709110	0.84[ASN][1000 genomes]
rs7711078	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7711211	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7711367	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7713038	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7713451	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7713846	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7715601	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7717644	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7722918	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7723108	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7729306	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7730532	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7730557	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7730949	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7732310	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7737023	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs919304	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs929774	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9326893	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9326897	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9654519	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9885245	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1862315	YTHDC2	cis	multi-tissue	Pritchard
rs1862315	YTHDC2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112848600-112850000	Active TSS	Rectal Mucosa Donor 29	rectum
2	chr5:112848600-112850200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:112848600-112850200	Active TSS	Colon Smooth Muscle	Colon
4	chr5:112848600-112850600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr5:112848600-112850600	Active TSS	Duodenum Smooth Muscle	Duodenum
6	chr5:112848600-112850800	Active TSS	K562	blood
7	chr5:112848800-112850000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:112848800-112850000	Active TSS	iPS-18 Cell Line	embryonic stem cell
9	chr5:112848800-112850000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr5:112848800-112850000	Active TSS	Primary T cells from cord blood	blood
11	chr5:112848800-112850000	Active TSS	Primary hematopoietic stem cells short term culture	blood
12	chr5:112848800-112850000	Active TSS	Primary T helper cells fromperipheralblood	blood
13	chr5:112848800-112850000	Active TSS	Liver	Liver
14	chr5:112848800-112850000	Active TSS	Brain Germinal Matrix	brain
15	chr5:112848800-112850000	Active TSS	HUVEC	blood vessel
16	chr5:112848800-112850200	Active TSS	HUES48 Cell Line	embryonic stem cell
17	chr5:112848800-112850200	Active TSS	HUES64 Cell Line	embryonic stem cell
18	chr5:112848800-112850200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr5:112848800-112850200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr5:112848800-112850200	Active TSS	Brain Cingulate Gyrus	brain
21	chr5:112848800-112850200	Active TSS	Brain Hippocampus Middle	brain
22	chr5:112848800-112850200	Active TSS	Brain Substantia Nigra	brain
23	chr5:112848800-112850200	Active TSS	Duodenum Mucosa	Duodenum
24	chr5:112848800-112850200	Active TSS	Fetal Brain Male	brain
25	chr5:112848800-112850200	Active TSS	Fetal Kidney	kidney
26	chr5:112848800-112850200	Active TSS	Left Ventricle	heart
27	chr5:112848800-112850200	Active TSS	Rectal Smooth Muscle	rectum
28	chr5:112848800-112850200	Active TSS	Hela-S3	cervix
29	chr5:112848800-112850400	Active TSS	Aorta	Aorta
30	chr5:112848800-112850400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
31	chr5:112848800-112850400	Active TSS	Psoas Muscle	Psoas
32	chr5:112848800-112850600	Active TSS	ES-I3 Cell Line	embryonic stem cell
33	chr5:112848800-112850600	Active TSS	iPS-15b Cell Line	embryonic stem cell
34	chr5:112848800-112850600	Active TSS	iPS-20b Cell Line	embryonic stem cell
35	chr5:112848800-112850600	Active TSS	Brain Angular Gyrus	brain
36	chr5:112848800-112850600	Active TSS	Brain Inferior Temporal Lobe	brain
37	chr5:112848800-112850600	Active TSS	Right Ventricle	heart
38	chr5:112848800-112850600	Active TSS	Stomach Smooth Muscle	stomach
39	chr5:112848800-112851000	Active TSS	A549	lung
40	chr5:112848800-112851400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr5:112849000-112850000	Active TSS	Primary monocytes fromperipheralblood	blood
42	chr5:112849000-112850000	Active TSS	Primary T cells fromperipheralblood	blood
43	chr5:112849000-112850000	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
44	chr5:112849000-112850000	Active TSS	Primary T killer naive cells fromperipheralblood	blood
45	chr5:112849000-112850000	Active TSS	Primary T killer memory cells from peripheral blood	blood
46	chr5:112849000-112850000	Active TSS	Cortex derived primary cultured neurospheres	brain
47	chr5:112849000-112850000	Active TSS	Adipose Nuclei	Adipose
48	chr5:112849000-112850000	Active TSS	Fetal Brain Female	brain
49	chr5:112849000-112850000	Active TSS	Fetal Heart	heart
50	chr5:112849000-112850000	Active TSS	Fetal Intestine Large	intestine

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