Variant report

Variant	rs10063008
Chromosome Location	chr5:112915077-112915078
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 168 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:164)

rs_ID	r²[population]
rs10036298	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10036300	0.90[ASN][1000 genomes]
rs10038632	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10039853	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10040203	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10040430	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10040516	0.81[ASN][1000 genomes]
rs10042563	0.82[ASN][1000 genomes]
rs10043066	0.82[ASN][1000 genomes]
rs10046057	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10052077	0.81[ASN][1000 genomes]
rs10053582	0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10061552	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10065616	0.81[ASN][1000 genomes]
rs10071816	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10072547	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10076131	0.85[ASN][1000 genomes]
rs10079603	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10079758	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10079895	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10079973	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10080096	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1017209	0.84[ASN][1000 genomes]
rs1035888	0.89[ASN][1000 genomes]
rs10477495	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10477497	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10477498	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10477499	0.80[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10477500	0.90[ASN][1000 genomes]
rs10478126	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10478127	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10478129	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10478132	0.80[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1052896	0.80[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1080858	0.81[ASN][1000 genomes]
rs11241210	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11241211	0.87[ASN][1000 genomes]
rs11241212	0.87[ASN][1000 genomes]
rs11241214	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11241215	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11742968	0.80[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs11749931	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11956399	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12186798	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12514105	0.90[ASN][1000 genomes]
rs12516911	0.80[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs12652172	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12654189	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12660001	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13359625	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13359648	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13359652	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13359703	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13362066	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1549628	0.89[ASN][1000 genomes]
rs17135753	0.80[EUR][1000 genomes]
rs17135766	0.90[ASN][1000 genomes]
rs17135776	0.90[ASN][1000 genomes]
rs1820059	0.87[ASN][1000 genomes]
rs1833680	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1833681	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1862315	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1970798	0.87[ASN][1000 genomes]
rs2115216	0.81[ASN][1000 genomes]
rs2162842	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2162847	0.81[ASN][1000 genomes]
rs2288449	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2416319	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs28558374	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28848005	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2900072	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs34514665	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34864074	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35162738	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35526509	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3763138	0.90[ASN][1000 genomes]
rs3763140	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3815911	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3906538	0.88[ASN][1000 genomes]
rs3909887	0.87[ASN][1000 genomes]
rs3936061	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4122547	0.82[ASN][1000 genomes]
rs4132093	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4132094	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4334877	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4588592	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4705552	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4705553	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4705555	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4705556	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4705557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4705825	0.87[ASN][1000 genomes]
rs4705827	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4705828	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4705832	0.89[ASN][1000 genomes]
rs4705833	0.83[ASN][1000 genomes]
rs56030143	0.87[ASN][1000 genomes]
rs56206672	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57134656	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58044020	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58391392	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60265545	0.88[ASN][1000 genomes]
rs60871281	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60914066	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6594721	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6594729	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6594732	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6594733	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6594734	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6594735	0.88[AMR][1000 genomes]
rs6594738	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67915940	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6865809	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6867502	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6876448	0.83[ASN][1000 genomes]
rs6877432	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6877466	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6877834	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6878282	0.86[ASN][1000 genomes]
rs6878355	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6878900	0.87[ASN][1000 genomes]
rs6880447	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6883383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6883557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6886199	0.88[AMR][1000 genomes]
rs6886628	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6887816	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6889501	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6889574	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6889783	0.87[ASN][1000 genomes]
rs6896469	0.80[EUR][1000 genomes]
rs6896501	0.80[EUR][1000 genomes]
rs6898425	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72805422	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7349799	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs754573	0.85[ASN][1000 genomes]
rs7701913	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7702833	0.80[EUR][1000 genomes]
rs7704170	0.80[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7706215	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7706958	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7707895	0.88[ASN][1000 genomes]
rs7711078	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7711211	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7711367	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7713038	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7713451	0.80[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7713846	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7715601	0.90[ASN][1000 genomes]
rs7717644	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7722918	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7723108	0.87[ASN][1000 genomes]
rs7729306	0.80[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7730532	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7730557	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7730949	0.88[ASN][1000 genomes]
rs7732310	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7737023	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs919304	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs929774	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9326893	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9326897	0.81[ASN][1000 genomes]
rs9654519	0.87[ASN][1000 genomes]
rs9885245	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882721	chr5:112859994-112963488	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv882724	chr5:112868878-112933202	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv1033202	chr5:112891857-112945992	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv520674	chr5:112911165-112942820	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10063008	YTHDC2	cis	multi-tissue	Pritchard
rs10063008	YTHDC2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112867400-112926000	Weak transcription	Small Intestine	intestine
2	chr5:112867400-112933000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr5:112870200-112930800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr5:112876000-112918800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr5:112889400-112930600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr5:112890600-112915800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr5:112898200-112921200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr5:112899400-112929400	Weak transcription	HepG2	liver
9	chr5:112900400-112915800	Weak transcription	HUVEC	blood vessel
10	chr5:112903000-112917000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr5:112904400-112917200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr5:112904600-112934800	Weak transcription	Psoas Muscle	Psoas
13	chr5:112904800-112916200	Weak transcription	Fetal Heart	heart
14	chr5:112907200-112915600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr5:112907400-112915600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr5:112907400-112932000	Weak transcription	Rectal Smooth Muscle	rectum
17	chr5:112908800-112916000	Weak transcription	Fetal Brain Male	brain
18	chr5:112908800-112935200	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr5:112909600-112915600	Weak transcription	Fetal Kidney	kidney
20	chr5:112910200-112915600	Weak transcription	NHLF	lung
21	chr5:112910400-112915600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr5:112910400-112917200	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr5:112910600-112915200	Weak transcription	HSMM	muscle
24	chr5:112910600-112915200	Weak transcription	K562	blood
25	chr5:112910600-112915600	Weak transcription	Placenta	Placenta
26	chr5:112910600-112915800	Weak transcription	Brain Hippocampus Middle	brain
27	chr5:112910600-112915800	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr5:112910600-112916400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr5:112910600-112917000	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr5:112910600-112917000	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr5:112910600-112917000	Weak transcription	Brain Angular Gyrus	brain
32	chr5:112910600-112919800	Weak transcription	NHDF-Ad	bronchial
33	chr5:112910600-112920000	Weak transcription	Brain Anterior Caudate	brain
34	chr5:112910600-112927000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr5:112910600-112927600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr5:112910600-112927800	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr5:112910600-112933400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr5:112910600-112935200	Weak transcription	Spleen	Spleen
39	chr5:112910600-112935400	Weak transcription	Colon Smooth Muscle	Colon
40	chr5:112910600-112936600	Weak transcription	Colonic Mucosa	Colon
41	chr5:112910600-112942000	Weak transcription	Brain Substantia Nigra	brain
42	chr5:112910800-112915200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr5:112910800-112915200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr5:112910800-112915200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr5:112910800-112915200	Weak transcription	Fetal Brain Female	brain
46	chr5:112910800-112915200	Weak transcription	Fetal Intestine Large	intestine
47	chr5:112910800-112915200	Weak transcription	Fetal Muscle Trunk	muscle
48	chr5:112910800-112915200	Weak transcription	Lung	lung
49	chr5:112910800-112915200	Weak transcription	Ovary	ovary
50	chr5:112910800-112915200	Weak transcription	Rectal Mucosa Donor 31	rectum

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