Variant report

Variant	rs1833681
Chromosome Location	chr5:112850526-112850527
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:112850115..112851621-chr5:112917619..112919519,2	K562	blood:
2	chr5:112538594..112540259-chr5:112848065..112850694,2	MCF-7	breast:
3	chr5:112823583..112825426-chr5:112850163..112852982,2	MCF-7	breast:
4	chr5:112823438..112825437-chr5:112848716..112850682,3	MCF-7	breast:
5	chr3:156876906..156878652-chr5:112849281..112850980,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163660	Chromatin interaction
ENSG00000171444	Chromatin interaction

Extended variants
information (count: 177 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:176)

rs_ID	r²[population]
rs10036298	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10036300	0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10038632	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10039853	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10040203	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10040430	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10040516	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10042563	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10043066	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10046057	0.95[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10052077	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10053582	0.87[CEU][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10061552	1.00[CHB][hapmap];0.91[JPT][hapmap];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10063008	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10065616	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10071816	0.93[CHB][hapmap];0.84[JPT][hapmap];0.91[MEX][hapmap];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10072547	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10076131	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10079603	0.86[CHB][hapmap];0.91[JPT][hapmap];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10079758	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10079895	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10079973	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10080096	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1017209	0.95[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.96[TSI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1035888	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10477495	0.94[CEU][hapmap];0.93[CHB][hapmap];0.84[JPT][hapmap];0.84[YRI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10477497	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10477498	0.92[ASN][1000 genomes]
rs10477499	0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10477500	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10478126	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10478127	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10478129	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10478132	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1052896	0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1080858	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11241210	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11241211	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11241212	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11241214	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[JPT][hapmap];0.95[MEX][hapmap];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11241215	0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11742968	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11749931	0.83[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.80[LWK][hapmap];0.95[MEX][hapmap];0.92[ASN][1000 genomes]
rs11750449	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11750488	0.86[EUR][1000 genomes]
rs11956399	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12186798	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12514105	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12516911	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12519315	0.81[AMR][1000 genomes]
rs12523145	0.93[CHB][hapmap];0.91[CHD][hapmap];0.84[MEX][hapmap];0.86[AMR][1000 genomes]
rs12652172	0.92[ASN][1000 genomes]
rs12654189	0.92[ASN][1000 genomes]
rs12660001	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13359625	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13359648	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13359652	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13359703	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs13362066	0.95[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1549628	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17135766	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17135776	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1820059	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1833680	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1862315	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1970798	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2115216	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2162842	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2162847	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2288449	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2416319	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28558374	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs28848005	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2900072	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34514665	0.95[ASN][1000 genomes]
rs34864074	0.95[ASN][1000 genomes]
rs35162738	0.95[ASN][1000 genomes]
rs35526509	0.91[ASN][1000 genomes]
rs3763138	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.95[MEX][hapmap];0.96[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3763140	1.00[CHB][hapmap];0.91[JPT][hapmap];0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs3815911	0.83[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3842917	0.84[CEU][hapmap];0.90[JPT][hapmap];0.80[YRI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3906371	0.84[JPT][hapmap]
rs3906538	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3909887	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3936061	0.83[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.80[LWK][hapmap];0.95[MEX][hapmap];0.95[ASN][1000 genomes]
rs4122547	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4132093	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4132094	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4334877	1.00[CHB][hapmap];0.91[JPT][hapmap];0.83[YRI][hapmap];0.95[ASN][1000 genomes]
rs4588592	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4705552	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4705553	0.94[ASN][1000 genomes]
rs4705555	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4705556	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4705557	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4705821	0.91[JPT][hapmap];0.91[MEX][hapmap]
rs4705823	0.94[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4705825	0.95[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.96[TSI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4705827	1.00[ASW][hapmap];0.95[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.93[TSI][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4705828	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4705832	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4705833	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56030143	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56206672	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs57134656	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58044020	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs58391392	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60265545	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60871281	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs60914066	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6594718	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6594719	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6594720	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6594721	0.83[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6594729	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6594732	1.00[ASW][hapmap];0.95[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6594733	1.00[ASW][hapmap];0.95[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6594734	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6594735	0.93[CHB][hapmap];0.91[CHD][hapmap];0.87[MEX][hapmap]
rs6594738	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67915940	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6865809	0.95[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6867502	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6876448	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6877432	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap];0.87[MEX][hapmap];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6877466	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6877834	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6878282	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6878355	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6878900	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6880447	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6883383	1.00[CHB][hapmap];0.82[GIH][hapmap];0.91[JPT][hapmap];0.95[MEX][hapmap];0.83[TSI][hapmap];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6883557	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6884704	0.88[CEU][hapmap]
rs6886199	0.86[CHB][hapmap];0.91[CHD][hapmap];0.87[MEX][hapmap]
rs6886628	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6887816	0.95[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6889501	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6889574	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6889783	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6898425	0.88[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72805422	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7349799	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs754573	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7701913	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7704170	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7705562	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7706215	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7706796	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7706958	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7707895	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7709110	0.80[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.84[ASN][1000 genomes]
rs7711078	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7711211	0.83[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.92[JPT][hapmap];0.95[MEX][hapmap];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7711367	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7713038	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7713451	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7713846	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7715601	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7717644	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7722918	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7723108	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7729306	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7730532	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7730557	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7730801	0.91[JPT][hapmap]
rs7730949	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.87[MEX][hapmap];0.96[TSI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7732310	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7737023	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs919304	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];0.91[JPT][hapmap];0.95[MEX][hapmap];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs929774	0.94[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9326893	1.00[CHB][hapmap];0.91[JPT][hapmap];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9326897	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9654519	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9885245	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs1833681	YTHDC2	Cis_1M	lymphoblastoid	RTeQTL
rs1833681	CDO1	cis	cerebellum	SCAN
rs1833681	YTHDC2	cis	multi-tissue	Pritchard
rs1833681	YTHDC2	cis	parietal	SCAN
rs1833681	YTHDC2	cis	cerebellum	SCAN

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112848600-112850600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr5:112848600-112850600	Active TSS	Duodenum Smooth Muscle	Duodenum
3	chr5:112848600-112850800	Active TSS	K562	blood
4	chr5:112848800-112850600	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr5:112848800-112850600	Active TSS	iPS-15b Cell Line	embryonic stem cell
6	chr5:112848800-112850600	Active TSS	iPS-20b Cell Line	embryonic stem cell
7	chr5:112848800-112850600	Active TSS	Brain Angular Gyrus	brain
8	chr5:112848800-112850600	Active TSS	Brain Inferior Temporal Lobe	brain
9	chr5:112848800-112850600	Active TSS	Right Ventricle	heart
10	chr5:112848800-112850600	Active TSS	Stomach Smooth Muscle	stomach
11	chr5:112848800-112851000	Active TSS	A549	lung
12	chr5:112848800-112851400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr5:112849000-112850600	Active TSS	H1 Cell Line	embryonic stem cell
14	chr5:112849000-112850600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
15	chr5:112849000-112850600	Active TSS	Breast Myoepithelial Primary Cells	Breast
16	chr5:112849000-112850600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr5:112849000-112850600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr5:112849000-112850600	Active TSS	Fetal Muscle Leg	muscle
19	chr5:112849000-112850600	Active TSS	Fetal Stomach	stomach
20	chr5:112849000-112850600	Active TSS	Rectal Mucosa Donor 31	rectum
21	chr5:112849000-112850800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr5:112849000-112850800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr5:112849000-112850800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr5:112849000-112850800	Active TSS	NHDF-Ad	bronchial
25	chr5:112849000-112851200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr5:112849000-112851200	Active TSS	HMEC	breast
27	chr5:112849000-112851400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr5:112849000-112851400	Active TSS	Pancreatic Islets	Pancreatic Islet
29	chr5:112849000-112851400	Active TSS	NHLF	lung
30	chr5:112849200-112851000	Active TSS	GM12878-XiMat	blood
31	chr5:112849600-112850600	Flanking Active TSS	Primary hematopoietic stem cells	blood
32	chr5:112849600-112850600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr5:112849800-112850600	Flanking Active TSS	Primary B cells from cord blood	blood
34	chr5:112849800-112850600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr5:112849800-112850600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr5:112850000-112850600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
37	chr5:112850000-112850600	Flanking Active TSS	Primary T cells from cord blood	blood
38	chr5:112850000-112850600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
39	chr5:112850000-112850600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
40	chr5:112850000-112850600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
41	chr5:112850000-112850600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
42	chr5:112850000-112850600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
43	chr5:112850000-112850600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr5:112850000-112850600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
45	chr5:112850000-112850600	Flanking Active TSS	Liver	Liver
46	chr5:112850000-112850600	Flanking Active TSS	Brain Germinal Matrix	brain
47	chr5:112850000-112850600	Flanking Active TSS	Fetal Brain Female	brain
48	chr5:112850000-112850600	Flanking Active TSS	Fetal Heart	heart
49	chr5:112850000-112850600	Flanking Active TSS	Fetal Intestine Large	intestine
50	chr5:112850000-112850600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum

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