Variant report

Variant	rs6877432
Chromosome Location	chr5:112882133-112882134
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:112881042..112882693-chr5:112886312..112889101,2	MCF-7	breast:
2	chr5:112879476..112882434-chr5:112884296..112887058,2	MCF-7	breast:

Extended variants
information (count: 179 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:171)

rs_ID	r²[population]
rs10036298	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10036300	0.93[CHB][hapmap];0.82[JPT][hapmap];0.95[ASN][1000 genomes]
rs10038632	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10039853	0.94[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10040203	1.00[CHB][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10040430	0.91[ASN][1000 genomes]
rs10046057	0.92[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs10053582	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10061552	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10063008	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10071816	0.94[CEU][hapmap];0.93[CHB][hapmap];0.95[GIH][hapmap];0.95[LWK][hapmap];0.87[MEX][hapmap];0.88[MKK][hapmap];0.86[TSI][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10072547	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10079603	0.86[CHB][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10079758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10079895	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10079973	0.94[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10080096	0.88[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1017209	0.92[CHB][hapmap];0.97[CHD][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs1035888	0.84[ASN][1000 genomes]
rs10477495	0.93[CHB][hapmap];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10477497	0.89[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10477498	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10477499	1.00[CHB][hapmap];0.91[JPT][hapmap];0.83[YRI][hapmap];0.83[ASN][1000 genomes]
rs10477500	1.00[CHB][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap];0.83[ASN][1000 genomes]
rs10478126	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10478127	0.94[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10478129	1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10478132	1.00[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs1052896	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs11241210	0.92[ASN][1000 genomes]
rs11241211	0.92[ASN][1000 genomes]
rs11241212	0.92[ASN][1000 genomes]
rs11241214	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];0.91[MEX][hapmap];0.83[MKK][hapmap];0.96[TSI][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11241215	1.00[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs11742968	0.83[ASN][1000 genomes]
rs11747924	0.94[CEU][hapmap]
rs11748794	0.89[CEU][hapmap]
rs11749931	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11956399	0.94[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12186798	0.94[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12514105	0.83[ASN][1000 genomes]
rs12516911	0.83[ASN][1000 genomes]
rs12519323	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs12523145	0.93[CHB][hapmap];0.90[CHD][hapmap]
rs12652172	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12654189	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12660001	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13359625	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13359648	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13359652	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13359703	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13362066	0.93[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1549628	0.84[ASN][1000 genomes]
rs17135753	0.89[CEU][hapmap]
rs17135754	0.89[CEU][hapmap]
rs17135766	0.83[ASN][1000 genomes]
rs17135776	0.83[ASN][1000 genomes]
rs1820059	0.92[ASN][1000 genomes]
rs1833678	0.89[CEU][hapmap]
rs1833680	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1833681	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap];0.87[MEX][hapmap];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1862315	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1970798	0.92[ASN][1000 genomes]
rs2042222	0.88[CEU][hapmap]
rs2162842	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2288449	0.94[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.97[LWK][hapmap];0.91[MEX][hapmap];0.89[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2416319	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28558374	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28848005	0.92[ASN][1000 genomes]
rs2900072	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34514665	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34864074	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35162738	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35526509	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3763138	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.81[LWK][hapmap];0.83[MEX][hapmap];0.81[YRI][hapmap];0.83[ASN][1000 genomes]
rs3763140	0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3815911	0.89[ASW][hapmap];0.94[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];0.89[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3842917	0.90[JPT][hapmap]
rs3846722	0.89[CEU][hapmap]
rs3906538	0.91[ASN][1000 genomes]
rs3909887	0.92[ASN][1000 genomes]
rs3936061	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4122547	0.85[ASN][1000 genomes]
rs4132093	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4132094	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4334877	0.88[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4588592	0.94[CEU][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4705551	0.89[CEU][hapmap]
rs4705552	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4705553	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4705555	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4705556	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4705557	0.94[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4705558	0.89[CEU][hapmap]
rs4705821	0.91[JPT][hapmap]
rs4705825	0.92[CHB][hapmap];0.97[CHD][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs4705826	0.89[CEU][hapmap]
rs4705827	0.93[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];0.82[JPT][hapmap];0.87[MEX][hapmap];0.80[TSI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4705828	1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4705832	0.84[ASN][1000 genomes]
rs56030143	0.80[ASN][1000 genomes]
rs56206672	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57134656	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs58044020	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58391392	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs60265545	0.91[ASN][1000 genomes]
rs60871281	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60914066	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6594721	0.92[CHB][hapmap];0.97[CHD][hapmap];0.82[JPT][hapmap];0.87[MEX][hapmap];0.92[ASN][1000 genomes]
rs6594729	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6594732	0.93[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap];0.87[MEX][hapmap];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6594733	0.93[CHB][hapmap];1.00[CHD][hapmap];0.87[MEX][hapmap];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6594734	0.83[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.95[LWK][hapmap];0.91[MEX][hapmap];0.94[MKK][hapmap];0.96[TSI][hapmap];0.84[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6594735	0.93[CHB][hapmap];0.90[CHD][hapmap];0.83[MEX][hapmap];0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6594738	0.83[ASN][1000 genomes]
rs67020702	0.82[EUR][1000 genomes]
rs67723806	0.82[EUR][1000 genomes]
rs67915940	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6864369	0.89[CEU][hapmap];0.81[TSI][hapmap]
rs6865809	0.86[CHB][hapmap];0.89[JPT][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6867502	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6876448	0.90[ASN][1000 genomes]
rs6877466	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6877834	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6878001	0.89[CEU][hapmap]
rs6878355	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6878900	0.80[ASN][1000 genomes]
rs6880447	0.87[ASN][1000 genomes]
rs6883383	0.94[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.97[LWK][hapmap];0.91[MEX][hapmap];0.89[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6883441	0.89[CEU][hapmap]
rs6883557	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6886199	0.86[CHB][hapmap];0.90[CHD][hapmap];0.82[MEX][hapmap];0.89[AMR][1000 genomes]
rs6886628	0.83[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.93[LWK][hapmap];0.91[MEX][hapmap];0.83[MKK][hapmap];0.96[TSI][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6887816	0.92[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs6889501	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6889574	0.83[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.95[LWK][hapmap];0.91[MEX][hapmap];0.94[MKK][hapmap];0.96[TSI][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6889783	0.92[ASN][1000 genomes]
rs6898425	0.81[CEU][hapmap];0.93[CHB][hapmap];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72805422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73242809	0.82[EUR][1000 genomes]
rs7349799	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7701913	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7704170	0.84[ASN][1000 genomes]
rs7705562	0.94[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.96[YRI][hapmap]
rs7706215	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7706958	0.94[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7707443	0.88[CEU][hapmap]
rs7707895	0.81[ASN][1000 genomes]
rs7709110	0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs7711078	1.00[CHB][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7711211	1.00[ASW][hapmap];0.94[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.94[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7711367	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];0.94[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7713038	1.00[CHB][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7713451	0.83[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.85[LWK][hapmap];0.87[MEX][hapmap];0.84[YRI][hapmap];0.83[ASN][1000 genomes]
rs7713846	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7715601	0.83[ASN][1000 genomes]
rs7717644	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7722918	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7723108	0.82[ASN][1000 genomes]
rs7729306	0.83[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap];0.85[LWK][hapmap];0.87[MEX][hapmap];0.84[YRI][hapmap];0.84[ASN][1000 genomes]
rs7730532	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7730557	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7730801	0.91[JPT][hapmap]
rs7730949	0.83[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.85[LWK][hapmap];0.82[MEX][hapmap];0.84[YRI][hapmap];0.81[ASN][1000 genomes]
rs7732310	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7737023	0.94[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs919304	0.94[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.97[LWK][hapmap];0.91[MEX][hapmap];0.89[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs929774	0.92[CHB][hapmap];0.82[JPT][hapmap];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9326893	0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs957777	0.89[CEU][hapmap]
rs9654519	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882720	chr5:112859994-112911165	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv882721	chr5:112859994-112963488	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv882722	chr5:112868878-112899573	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv882723	chr5:112868878-112911165	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv882724	chr5:112868878-112933202	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
6	esv2540445	chr5:112880688-112882145	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3448463	chr5:112880753-112882751	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3322239	chr5:112881253-112882251	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs6877432	YTHDC2	Cis_1M	lymphoblastoid	RTeQTL
rs6877432	YTHDC2	cis	cerebellum	SCAN
rs6877432	SNORA13	cis	parietal	SCAN
rs6877432	CDO1	cis	cerebellum	SCAN
rs6877432	YTHDC2	cis	parietal	SCAN

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112850400-112904000	Weak transcription	Psoas Muscle	Psoas
2	chr5:112850600-112908400	Weak transcription	Colonic Mucosa	Colon
3	chr5:112851600-112893200	Weak transcription	Fetal Brain Male	brain
4	chr5:112851600-112902800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr5:112852400-112882200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr5:112852400-112882200	Weak transcription	Fetal Heart	heart
7	chr5:112853200-112882400	Weak transcription	Brain Angular Gyrus	brain
8	chr5:112858800-112882200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr5:112860400-112882200	Weak transcription	Colon Smooth Muscle	Colon
10	chr5:112862800-112891200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr5:112864200-112882200	Weak transcription	Stomach Mucosa	stomach
12	chr5:112867000-112888200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr5:112867000-112910000	Weak transcription	Right Ventricle	heart
14	chr5:112867200-112882400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr5:112867200-112903400	Weak transcription	Pancreas	Pancrea
16	chr5:112867200-112904000	Weak transcription	Lung	lung
17	chr5:112867200-112904200	Weak transcription	Aorta	Aorta
18	chr5:112867200-112909800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr5:112867200-112909800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr5:112867200-112910000	Weak transcription	Esophagus	oesophagus
21	chr5:112867400-112882200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr5:112867400-112888000	Weak transcription	HSMMtube	muscle
23	chr5:112867400-112888800	Weak transcription	Ovary	ovary
24	chr5:112867400-112926000	Weak transcription	Small Intestine	intestine
25	chr5:112867400-112933000	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr5:112867600-112882600	Weak transcription	Fetal Brain Female	brain
27	chr5:112867600-112891200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr5:112868000-112893400	Strong transcription	Dnd41	blood
29	chr5:112868400-112893600	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr5:112868600-112886400	Strong transcription	Liver	Liver
31	chr5:112868600-112911400	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr5:112869200-112910000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr5:112869800-112884200	Weak transcription	Fetal Kidney	kidney
34	chr5:112870200-112930800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr5:112871200-112882200	Weak transcription	NH-A	brain
36	chr5:112872000-112904000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr5:112872000-112915000	Weak transcription	Hela-S3	cervix
38	chr5:112873000-112883200	Strong transcription	Fetal Thymus	thymus
39	chr5:112873000-112894000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr5:112873000-112900600	Strong transcription	Primary T cells fromperipheralblood	blood
41	chr5:112873400-112908800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr5:112873800-112883000	Strong transcription	Adipose Nuclei	Adipose
43	chr5:112873800-112888400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr5:112874000-112909600	Weak transcription	Spleen	Spleen
45	chr5:112874400-112902600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr5:112876000-112882600	Weak transcription	Primary neutrophils fromperipheralblood	blood
47	chr5:112876000-112918800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr5:112876200-112886400	Strong transcription	Primary B cells from cord blood	blood
49	chr5:112876800-112882200	Weak transcription	HUVEC	blood vessel
50	chr5:112877200-112905800	Weak transcription	Fetal Stomach	stomach

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