Variant report

Variant	rs67723806
Chromosome Location	chr5:112892124-112892125
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:112883582..112886447-chr5:112891151..112893823,3	MCF-7	breast:

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10039853	0.81[EUR][1000 genomes]
rs10061552	0.83[EUR][1000 genomes]
rs10071816	0.83[EUR][1000 genomes]
rs10079758	0.83[EUR][1000 genomes]
rs10079895	0.83[EUR][1000 genomes]
rs10079973	0.86[EUR][1000 genomes]
rs10080096	0.81[EUR][1000 genomes]
rs10477497	0.83[EUR][1000 genomes]
rs10477498	0.81[EUR][1000 genomes]
rs10478127	0.83[EUR][1000 genomes]
rs11241214	0.83[EUR][1000 genomes]
rs11747924	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11748145	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11748794	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11749931	0.81[EUR][1000 genomes]
rs11956399	0.83[EUR][1000 genomes]
rs12186798	0.81[EUR][1000 genomes]
rs12519323	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12652172	0.84[EUR][1000 genomes]
rs12654189	0.81[EUR][1000 genomes]
rs12660001	0.83[EUR][1000 genomes]
rs17135630	0.81[ASN][1000 genomes]
rs17135753	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17135754	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1833678	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2042222	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2162842	0.83[EUR][1000 genomes]
rs2416281	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28558374	0.83[EUR][1000 genomes]
rs34514665	0.81[EUR][1000 genomes]
rs34864074	0.81[EUR][1000 genomes]
rs35162738	0.81[EUR][1000 genomes]
rs3763140	0.83[EUR][1000 genomes]
rs3846722	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3936061	0.81[EUR][1000 genomes]
rs4122546	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4334877	0.81[EUR][1000 genomes]
rs4705551	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4705553	0.81[EUR][1000 genomes]
rs4705558	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4705826	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57077871	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58044020	0.83[EUR][1000 genomes]
rs60871281	0.82[EUR][1000 genomes]
rs6594734	0.83[EUR][1000 genomes]
rs6594737	0.80[AMR][1000 genomes]
rs66490974	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs66497221	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67020702	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67103739	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6859688	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6861786	0.81[EUR][1000 genomes]
rs6864369	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6877432	0.82[EUR][1000 genomes]
rs6878001	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6882900	0.81[EUR][1000 genomes]
rs6883441	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6884704	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6886628	0.83[EUR][1000 genomes]
rs6889501	0.83[EUR][1000 genomes]
rs6889574	0.83[EUR][1000 genomes]
rs6896469	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6896501	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72794121	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72805422	0.83[EUR][1000 genomes]
rs73241779	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73242809	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73247445	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7349799	0.83[EUR][1000 genomes]
rs7702833	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7706215	0.83[EUR][1000 genomes]
rs7706958	0.81[EUR][1000 genomes]
rs7707443	0.85[EUR][1000 genomes]
rs7711211	0.82[EUR][1000 genomes]
rs7711367	0.83[EUR][1000 genomes]
rs7729433	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7737023	0.83[EUR][1000 genomes]
rs9326893	0.83[EUR][1000 genomes]
rs957777	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882720	chr5:112859994-112911165	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv882721	chr5:112859994-112963488	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv882722	chr5:112868878-112899573	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv882723	chr5:112868878-112911165	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv882724	chr5:112868878-112933202	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
6	esv3430774	chr5:112888153-112892251	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1033202	chr5:112891857-112945992	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112850400-112904000	Weak transcription	Psoas Muscle	Psoas
2	chr5:112850600-112908400	Weak transcription	Colonic Mucosa	Colon
3	chr5:112851600-112893200	Weak transcription	Fetal Brain Male	brain
4	chr5:112851600-112902800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr5:112867000-112910000	Weak transcription	Right Ventricle	heart
6	chr5:112867200-112903400	Weak transcription	Pancreas	Pancrea
7	chr5:112867200-112904000	Weak transcription	Lung	lung
8	chr5:112867200-112904200	Weak transcription	Aorta	Aorta
9	chr5:112867200-112909800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr5:112867200-112909800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr5:112867200-112910000	Weak transcription	Esophagus	oesophagus
12	chr5:112867400-112926000	Weak transcription	Small Intestine	intestine
13	chr5:112867400-112933000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr5:112868000-112893400	Strong transcription	Dnd41	blood
15	chr5:112868400-112893600	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr5:112868600-112911400	Strong transcription	Primary T helper cells fromperipheralblood	blood
17	chr5:112869200-112910000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr5:112870200-112930800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr5:112872000-112904000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr5:112872000-112915000	Weak transcription	Hela-S3	cervix
21	chr5:112873000-112894000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr5:112873000-112900600	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr5:112873400-112908800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr5:112874000-112909600	Weak transcription	Spleen	Spleen
25	chr5:112874400-112902600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr5:112876000-112918800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr5:112877200-112905800	Weak transcription	Fetal Stomach	stomach
28	chr5:112878200-112894000	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr5:112879600-112895200	Weak transcription	Left Ventricle	heart
30	chr5:112879600-112902800	Weak transcription	Thymus	Thymus
31	chr5:112879600-112904200	Weak transcription	Gastric	stomach
32	chr5:112881800-112906400	Weak transcription	Fetal Intestine Small	intestine
33	chr5:112882000-112893400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr5:112882600-112904000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr5:112882800-112909600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr5:112883000-112899600	Weak transcription	Brain Angular Gyrus	brain
37	chr5:112883000-112903200	Weak transcription	Rectal Smooth Muscle	rectum
38	chr5:112883200-112895200	Weak transcription	NHEK	skin
39	chr5:112883200-112896400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr5:112883400-112895400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr5:112883800-112893200	Strong transcription	Adipose Nuclei	Adipose
42	chr5:112883800-112907400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr5:112884200-112905200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr5:112884200-112905600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr5:112884200-112908000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr5:112884800-112893400	Strong transcription	Rectal Mucosa Donor 31	rectum
47	chr5:112884800-112896800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr5:112885400-112895000	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr5:112885400-112897800	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr5:112885600-112895000	Weak transcription	A549	lung

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