Variant report

Variant	rs67103739
Chromosome Location	chr5:112822943-112822944
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:112810517..112812922-chr5:112822746..112824513,2	MCF-7	breast:
2	chr5:112771582..112773208-chr5:112822674..112824229,2	MCF-7	breast:
3	chr5:112815129..112817278-chr5:112821546..112824225,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10900685	0.82[ASN][1000 genomes]
rs11741963	0.82[ASN][1000 genomes]
rs11747924	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11748145	0.86[EUR][1000 genomes]
rs11748794	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11750945	0.82[ASN][1000 genomes]
rs12516418	0.82[ASN][1000 genomes]
rs12519323	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12519818	0.89[ASN][1000 genomes]
rs17135630	0.92[ASN][1000 genomes]
rs17135753	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17135754	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1833678	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2042222	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2416281	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3846722	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4122546	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4705551	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4705558	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4705826	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57077871	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs66490974	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66497221	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66502937	0.89[ASN][1000 genomes]
rs66583752	0.89[ASN][1000 genomes]
rs66644309	0.82[ASN][1000 genomes]
rs67020702	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67268709	0.89[ASN][1000 genomes]
rs67723806	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6859688	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6861786	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6864369	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6878001	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6879800	0.89[ASN][1000 genomes]
rs6882900	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6883441	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6896469	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6896501	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72792179	0.89[ASN][1000 genomes]
rs72794121	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72805465	0.82[EUR][1000 genomes]
rs73241779	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73242809	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73247445	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7702833	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7707443	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7717000	0.82[ASN][1000 genomes]
rs7729433	0.81[EUR][1000 genomes]
rs957777	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112810200-112823000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr5:112820600-112823000	Weak transcription	Right Ventricle	heart
3	chr5:112821800-112823000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr5:112822000-112824400	Active TSS	HMEC	breast
5	chr5:112822200-112824600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr5:112822400-112823000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr5:112822600-112824600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr5:112822800-112823000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
9	chr5:112822800-112823000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr5:112822800-112823000	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr5:112822800-112823000	Enhancers	Brain Anterior Caudate	brain
12	chr5:112822800-112823000	Enhancers	Colon Smooth Muscle	Colon
13	chr5:112822800-112823000	Enhancers	Esophagus	oesophagus
14	chr5:112822800-112823000	Enhancers	Stomach Smooth Muscle	stomach
15	chr5:112822800-112823000	Flanking Active TSS	NHEK	skin
16	chr5:112822800-112823400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
17	chr5:112822800-112823400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
18	chr5:112822800-112823600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr5:112822800-112823800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
20	chr5:112822800-112824400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
21	chr5:112822800-112824400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr5:112822800-112824600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr5:112822800-112824800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
24	chr5:112822800-112825000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
25	chr5:112822800-112825200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links