Variant report

Variant	rs73241779
Chromosome Location	chr5:112801672-112801673
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10900685	0.85[ASN][1000 genomes]
rs11241209	0.82[AFR][1000 genomes]
rs11741963	0.85[ASN][1000 genomes]
rs11747924	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11748145	0.84[EUR][1000 genomes]
rs11748794	0.85[EUR][1000 genomes]
rs11750945	0.85[ASN][1000 genomes]
rs12152879	0.81[AFR][1000 genomes]
rs12516418	0.85[ASN][1000 genomes]
rs12519323	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12519818	0.88[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs17135616	0.85[AFR][1000 genomes]
rs17135630	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17135753	0.85[EUR][1000 genomes]
rs17135754	0.80[EUR][1000 genomes]
rs1833678	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2042222	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2416281	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3846722	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4122546	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4705551	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4705558	0.84[EUR][1000 genomes]
rs4705818	0.81[AFR][1000 genomes]
rs4705819	0.81[AFR][1000 genomes]
rs4705826	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57077871	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs59954246	0.82[ASN][1000 genomes]
rs66490974	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66497221	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66502937	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs66583752	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs66644309	0.85[ASN][1000 genomes]
rs67020702	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs67103739	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67268709	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs67303814	0.87[AFR][1000 genomes]
rs67723806	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6859688	0.84[EUR][1000 genomes]
rs6861786	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6864369	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6878001	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6879800	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6882900	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6883441	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6896469	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6896501	0.87[EUR][1000 genomes]
rs72792179	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs72794121	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73236478	0.84[AFR][1000 genomes]
rs73242809	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73247445	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7702833	0.87[EUR][1000 genomes]
rs7707443	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7717000	0.85[ASN][1000 genomes]
rs957777	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112786200-112810000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:112788000-112808000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:112788200-112807600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:112794800-112810000	Weak transcription	NHEK	skin
5	chr5:112801200-112801800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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