Variant report

Variant	rs4132094
Chromosome Location	chr5:112869102-112869103
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:112867415..112871234-chr5:112874702..112879170,5	K562	blood:

Extended variants
information (count: 128 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs10036298	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10036300	0.94[ASN][1000 genomes]
rs10038632	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10039853	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10040203	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10040430	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10046057	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10053582	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10061552	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10063008	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10071816	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10072547	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10079603	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10079758	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10079895	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10079973	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10080096	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1017209	0.86[ASN][1000 genomes]
rs10477495	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10477497	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10477498	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10478126	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10478127	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10478129	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11241210	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11241211	0.89[ASN][1000 genomes]
rs11241212	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11241214	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11747924	0.82[EUR][1000 genomes]
rs11749931	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11956399	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12186798	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12652172	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12654189	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12660001	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13359625	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13359648	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13359652	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13359703	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13362066	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1820059	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1833680	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1833681	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1862315	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1970798	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2042222	0.81[EUR][1000 genomes]
rs2162842	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2288449	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2416319	0.82[ASN][1000 genomes]
rs28558374	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28848005	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2900072	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs34514665	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34864074	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35162738	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35526509	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3763140	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3815911	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3906538	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3909887	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3936061	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4132093	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4334877	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4588592	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4705552	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4705553	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4705555	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4705556	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4705557	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4705825	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4705827	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4705828	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56206672	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57134656	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58044020	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58391392	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60265545	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60871281	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60914066	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6594721	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6594729	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6594732	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6594733	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6594734	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6594735	0.81[AMR][1000 genomes]
rs67915940	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6865809	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6867502	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6876448	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6877432	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6877466	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6877834	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6878355	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6880447	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6883383	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6883557	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6886199	0.81[AMR][1000 genomes]
rs6886628	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6887816	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6889501	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6889574	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6889783	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6898425	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72805422	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7349799	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7701913	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7706215	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7706958	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7711078	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7711211	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7711367	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7713038	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7713846	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7717644	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7722918	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7730532	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7730557	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7732310	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7737023	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs919304	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs929774	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9326893	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9654519	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882720	chr5:112859994-112911165	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv882721	chr5:112859994-112963488	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv882722	chr5:112868878-112899573	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv882723	chr5:112868878-112911165	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv882724	chr5:112868878-112933202	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4132094	YTHDC2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112850400-112879000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr5:112850400-112879200	Weak transcription	Gastric	stomach
3	chr5:112850400-112904000	Weak transcription	Psoas Muscle	Psoas
4	chr5:112850600-112874800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr5:112850600-112879200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr5:112850600-112908400	Weak transcription	Colonic Mucosa	Colon
7	chr5:112851400-112879000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr5:112851600-112893200	Weak transcription	Fetal Brain Male	brain
9	chr5:112851600-112902800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr5:112852400-112878800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr5:112852400-112882200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr5:112852400-112882200	Weak transcription	Fetal Heart	heart
13	chr5:112853200-112882400	Weak transcription	Brain Angular Gyrus	brain
14	chr5:112857000-112877600	Weak transcription	HepG2	liver
15	chr5:112858800-112876000	Weak transcription	Brain Anterior Caudate	brain
16	chr5:112858800-112882000	Weak transcription	Brain Substantia Nigra	brain
17	chr5:112858800-112882200	Weak transcription	Rectal Smooth Muscle	rectum
18	chr5:112860400-112879000	Weak transcription	Brain Hippocampus Middle	brain
19	chr5:112860400-112882200	Weak transcription	Colon Smooth Muscle	Colon
20	chr5:112861000-112869800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr5:112861800-112869800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr5:112862800-112891200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr5:112864200-112882200	Weak transcription	Stomach Mucosa	stomach
24	chr5:112864400-112869600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr5:112866000-112878000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr5:112867000-112882000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr5:112867000-112888200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr5:112867000-112910000	Weak transcription	Right Ventricle	heart
29	chr5:112867200-112869400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr5:112867200-112870600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr5:112867200-112870800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr5:112867200-112871000	Weak transcription	Osteobl	bone
33	chr5:112867200-112871800	Strong transcription	HSMM	muscle
34	chr5:112867200-112873600	Weak transcription	K562	blood
35	chr5:112867200-112878800	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr5:112867200-112880600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr5:112867200-112882400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr5:112867200-112903400	Weak transcription	Pancreas	Pancrea
39	chr5:112867200-112904000	Weak transcription	Lung	lung
40	chr5:112867200-112904200	Weak transcription	Aorta	Aorta
41	chr5:112867200-112909800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr5:112867200-112909800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr5:112867200-112910000	Weak transcription	Esophagus	oesophagus
44	chr5:112867400-112869200	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr5:112867400-112869200	Weak transcription	Fetal Thymus	thymus
46	chr5:112867400-112869400	Weak transcription	Duodenum Mucosa	Duodenum
47	chr5:112867400-112869800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr5:112867400-112871800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr5:112867400-112871800	Strong transcription	Muscle Satellite Cultured Cells	--
50	chr5:112867400-112873600	Weak transcription	Left Ventricle	heart

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