Variant report

Variant	rs929774
Chromosome Location	chr5:112849478-112849479
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:444)
CpG islands
(count:61)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:444 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr5:112849003-112849548	GM12878	blood:	n/a	n/a
2	MYC	chr5:112849113-112849679	K562	blood:	n/a	n/a
3	ELF1	chr5:112849355-112849665	HepG2	liver:	n/a	n/a
4	TAF1	chr5:112849178-112849683	MCF-7	breast:	n/a	n/a
5	HEY1	chr5:112849142-112849834	HepG2	liver:	n/a	chr5:112849371-112849380 chr5:112849333-112849348
6	YY1	chr5:112849091-112849816	A549	lung:	n/a	chr5:112849278-112849287
7	MYC	chr5:112849069-112849708	A549	lung:	n/a	n/a
8	USF1	chr5:112849125-112849556	A549	lung:	n/a	chr5:112849331-112849347 chr5:112849332-112849348
9	POLR2A	chr5:112849115-112849712	GM12891	blood:	n/a	n/a
10	POLR2A	chr5:112849075-112850323	GM12878	blood:	n/a	n/a
11	SMARCB1	chr5:112849180-112850066	Hela-S3	cervix:	n/a	n/a
12	ZNF143	chr5:112849103-112849701	H1-hESC	embryonic stem cell:	n/a	n/a
13	POLR2A	chr5:112849106-112849988	GM18951	blood:	n/a	n/a
14	USF1	chr5:112849233-112849506	SK-N-SH_RA	brain:	n/a	chr5:112849331-112849347 chr5:112849332-112849348
15	STAT3	chr5:112849297-112849525	MCF10A-Er-Src	breast:	n/a	chr5:112849490-112849510
16	POLR2A	chr5:112849118-112850144	Hela-S3	cervix:	n/a	n/a
17	SIN3A	chr5:112849112-112850105	H1-hESC	embryonic stem cell:	n/a	chr5:112849359-112849372
18	YY1	chr5:112849198-112849723	HCT-116	colon:	n/a	chr5:112849278-112849287
19	JUND	chr5:112849092-112849781	K562	blood:	n/a	chr5:112849372-112849381
20	CTCF	chr5:112849380-112849530	HCM	heart:	n/a	n/a
21	KAP1	chr5:112848618-112849478	K562	blood:	n/a	n/a
22	PAX5	chr5:112849243-112850018	GM12892	blood:	n/a	chr5:112849339-112849348
23	MAX	chr5:112849094-112849731	K562	blood:	n/a	n/a
24	EP300	chr5:112849146-112849621	GM12878	blood:	n/a	chr5:112849337-112849346 chr5:112849557-112849573
25	TAF1	chr5:112849118-112850152	H1-neurons	neurons:	n/a	n/a
26	POLR2A	chr5:112849101-112850052	H1-hESC	embryonic stem cell:	n/a	n/a
27	YY1	chr5:112848995-112850000	SK-N-SH	brain:	n/a	chr5:112849278-112849287
28	MAX	chr5:112849026-112849847	ECC-1	luminal epithelium:	n/a	n/a
29	IRF1	chr5:112849192-112849657	K562	blood:	n/a	chr5:112849286-112849295 chr5:112849531-112849540
30	TAF1	chr5:112849092-112849654	PFSK-1	brain:	n/a	n/a
31	RAD21	chr5:112849001-112849823	H1-hESC	embryonic stem cell:	n/a	n/a
32	CTCF	chr5:112849097-112849770	IMR90	lung:	n/a	n/a
33	POLR2A	chr5:112849121-112849746	K562	blood:	n/a	n/a
34	YY1	chr5:112849081-112849884	GM12878	blood:	n/a	chr5:112849278-112849287
35	RAD21	chr5:112849027-112849546	A549	lung:	n/a	n/a
36	POLR2A	chr5:112849147-112849678	HepG2	liver:	n/a	n/a
37	MAFK	chr5:112849135-112849585	IMR90	lung:	n/a	n/a
38	EBF1	chr5:112849135-112849629	GM12878	blood:	n/a	n/a
39	ZNF263	chr5:112848757-112849639	HEK293-T-REx	kidney:	n/a	chr5:112849243-112849264
40	UBTF	chr5:112849217-112850210	K562	blood:	n/a	n/a
41	CTCF	chr5:112849176-112849724	Spleen_OC	spleen:	n/a	n/a
42	NFYA	chr5:112849254-112849707	Hela-S3	cervix:	n/a	chr5:112849530-112849540 chr5:112849528-112849542
43	TAF1	chr5:112849260-112849583	GM12892	blood:	n/a	n/a
44	EGR1	chr5:112849100-112849786	GM12878	blood:	n/a	chr5:112849385-112849395
45	TBL1XR1	chr5:112849269-112849656	GM12878	blood:	n/a	n/a
46	POLR2A	chr5:112849101-112849669	K562	blood:	n/a	n/a
47	MAX	chr5:112849085-112849663	SK-N-SH	brain:	n/a	n/a
48	YY1	chr5:112849129-112849784	HepG2	liver:	n/a	chr5:112849278-112849287
49	YY1	chr5:112849078-112849726	GM12891	blood:	n/a	chr5:112849278-112849287
50	YY1	chr5:112849100-112849678	H1-hESC	embryonic stem cell:	n/a	chr5:112849278-112849287

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr5:112849442-112849492	AG04449	skin:	fetal
2	chr5:112849442-112849492	CMK	blood:	n/a
3	chr5:112849442-112849492	HEEpiC	esophagus:	n/a
4	chr5:112849442-112849492	U87	brain:	n/a
5	chr5:112849442-112849492	Caco-2	colon:	n/a
6	chr5:112849442-112849492	GM06990	blood:	n/a
7	chr5:112849442-112849492	BJ	skin:	n/a
8	chr5:112849442-112849492	BE2_C	brain:	n/a
9	chr5:112849442-112849492	IMR90	lung:	fetal
10	chr5:112849442-112849492	RPTEC	kidney:	n/a
11	chr5:112849442-112849492	HUVEC	blood vessel:	n/a
12	chr5:112849442-112849492	GM12878	blood:	n/a
13	chr5:112849442-112849492	SK-N-SH	brain:	n/a
14	chr5:112849442-112849492	HCT-116	colon:	n/a
15	chr5:112849442-112849492	Hepatocyte	liver:	n/a
16	chr5:112849442-112849492	HPAEpiC	pulmonary alveolar:	n/a
17	chr5:112849442-112849492	HepG2	liver:	n/a
18	chr5:112849442-112849492	HRPEpiC	eye:	n/a
19	chr5:112849442-112849492	GM19239	blood:	n/a
20	chr5:112849442-112849492	HAEpiC	amniotic membrane:	n/a
21	chr5:112849442-112849492	H1-hESC	embryonic stem cell:	embryo
22	chr5:112849442-112849492	Jurkat	blood:	n/a
23	chr5:112849442-112849492	AG04450	lung:	fetal
24	chr5:112849442-112849492	SK-N-SH_RA	brain:	n/a
25	chr5:112849442-112849492	PrEC	prostate:	n/a
26	chr5:112849442-112849492	ProgFib	skin:	n/a
27	chr5:112849442-112849492	HCM	heart:	n/a
28	chr5:112849442-112849492	HCPEpiC	choroid plexus:	n/a
29	chr5:112849442-112849492	ovcar-3	ovarian:	n/a
30	chr5:112849442-112849492	AoSMC	blood vessel:	n/a
31	chr5:112849442-112849492	ECC-1	luminal epithelium:	n/a
32	chr5:112849442-112849492	K562	blood:	n/a
33	chr5:112849442-112849492	HRE	kidney:	n/a
34	chr5:112849442-112849492	HMEC	breast:	n/a
35	chr5:112849442-112849492	A549	lung:	n/a
36	chr5:112849442-112849492	MCF-7	breast:	n/a
37	chr5:112849442-112849492	SKMC	muscle:	n/a
38	chr5:112849442-112849492	PANC-1	pancreas:	n/a
39	chr5:112849442-112849492	HRCEpiC	kidney:	n/a
40	chr5:112849442-112849492	NB4	blood:	n/a
41	chr5:112849442-112849492	MCF10A-Er-Src	breast:	n/a
42	chr5:112849442-112849492	NHDF-neo	bronchial:	n/a
43	chr5:112849442-112849492	PFSK-1	brain:	n/a
44	chr5:112849442-112849492	T-47D	breast:	n/a
45	chr5:112849442-112849492	HIPEpiC	eye:	n/a
46	chr5:112849442-112849492	NHBE	bronchial:	n/a
47	chr5:112849442-112849492	SK-N-MC	brain:	n/a
48	chr5:112849442-112849492	HNPCEpiC	eye:	n/a
49	chr5:112849442-112849492	HL-60	blood:	n/a
50	chr5:112849442-112849492	AG10803	skin:	n/a

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:112538594..112540259-chr5:112848065..112850694,2	MCF-7	breast:
2	chr5:112849001..112849959-chr9:103114723..103115456,2	Hela-S3	cervix:
3	chr5:112849179..112849987-chrX:16887943..16888707,2	Hela-S3	cervix:
4	chr5:112823438..112825437-chr5:112848716..112850682,3	MCF-7	breast:
5	chr3:156876906..156878652-chr5:112849281..112850980,2	MCF-7	breast:

No data

Variant related genes	Relation type
YTHDC2	TF binding region
YTHDC2	CpG island
ENSG00000163660	Chromatin interaction
ENSG00000136891	Chromatin interaction
ENSG00000102054	Chromatin interaction
ENSG00000171444	Chromatin interaction

Extended variants
information (count: 184 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:183)

rs_ID	r²[population]
rs10036298	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10036300	0.87[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10038632	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10039853	0.83[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10040203	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10040430	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10040516	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10042563	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10043066	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10046057	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10052077	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10053582	0.93[CEU][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10061552	0.83[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10063008	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10065616	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10071816	0.83[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10072547	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10076131	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10079603	0.81[CHB][hapmap];0.91[JPT][hapmap];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10079758	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10079895	0.83[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10079973	0.83[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10080096	0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.92[ASN][1000 genomes]
rs1017209	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1035888	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10477495	1.00[CEU][hapmap];0.87[CHB][hapmap];0.84[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10477497	0.93[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10477498	0.92[ASN][1000 genomes]
rs10477499	1.00[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10477500	1.00[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10478126	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10478127	0.82[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10478129	1.00[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10478132	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1052896	1.00[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1080858	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11241210	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11241211	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11241212	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11241214	0.83[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11241215	0.94[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11742968	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11747924	0.82[CEU][hapmap]
rs11749931	0.83[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap];0.83[YRI][hapmap];0.92[ASN][1000 genomes]
rs11750449	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11750488	0.86[EUR][1000 genomes]
rs11956399	0.83[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12186798	0.83[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12514105	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12516911	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12519315	0.81[AMR][1000 genomes]
rs12523145	0.86[CHB][hapmap];0.86[AMR][1000 genomes]
rs12652172	0.92[ASN][1000 genomes]
rs12654189	0.92[ASN][1000 genomes]
rs12660001	0.83[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13359625	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13359648	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13359652	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13359703	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs13362066	1.00[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1549628	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17135766	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17135776	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1820059	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1833680	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1833681	0.94[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1862315	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1970798	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2115216	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2162842	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2162847	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2248930	0.81[YRI][hapmap]
rs2288449	0.83[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2416319	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28558374	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs28848005	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2900072	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34514665	0.95[ASN][1000 genomes]
rs34864074	0.95[ASN][1000 genomes]
rs348928	0.84[YRI][hapmap]
rs348961	0.81[YRI][hapmap]
rs348962	0.81[YRI][hapmap]
rs348963	0.81[YRI][hapmap]
rs35162738	0.95[ASN][1000 genomes]
rs35526509	0.91[ASN][1000 genomes]
rs367943	0.81[YRI][hapmap]
rs3763138	1.00[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3763140	0.83[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs3815911	0.82[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3842917	0.89[CEU][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3906371	0.84[JPT][hapmap]
rs3906538	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3909887	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3936061	0.83[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap];0.83[YRI][hapmap];0.95[ASN][1000 genomes]
rs4122547	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4132093	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4132094	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4334877	0.93[CHB][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap];0.95[ASN][1000 genomes]
rs4588592	0.83[CEU][hapmap];0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4705552	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4705553	0.94[ASN][1000 genomes]
rs4705555	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4705556	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4705557	0.83[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4705821	0.91[JPT][hapmap];0.81[YRI][hapmap]
rs4705823	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4705825	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4705827	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4705828	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4705832	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4705833	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56030143	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56206672	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs57134656	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58044020	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs58391392	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60265545	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60871281	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs60914066	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6594718	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6594719	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6594720	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6594721	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6594729	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6594732	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6594733	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6594734	0.83[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6594735	0.86[CHB][hapmap]
rs6594738	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67915940	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6865809	1.00[CEU][hapmap];0.89[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6867502	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6876448	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6877432	0.92[CHB][hapmap];0.82[JPT][hapmap];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6877466	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6877834	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6878282	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6878355	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6878900	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6880447	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6883383	0.83[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6883557	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6884704	0.94[CEU][hapmap]
rs6886628	0.83[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6887816	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6889501	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6889574	0.83[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6889783	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6898425	0.93[CEU][hapmap];0.87[CHB][hapmap];0.92[JPT][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72805422	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7349799	0.92[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs754573	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7701913	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7704170	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7705562	0.83[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs7706215	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7706796	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7706958	0.83[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7707443	0.81[CEU][hapmap]
rs7707895	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7709110	1.00[JPT][hapmap];0.81[YRI][hapmap];0.84[ASN][1000 genomes]
rs7711078	0.93[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7711211	0.88[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7711367	0.83[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7713038	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7713451	1.00[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7713846	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7715601	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7717644	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7722918	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7723108	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7729306	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7730532	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7730557	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7730801	0.91[JPT][hapmap]
rs7730949	1.00[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7732310	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7737023	0.83[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs919304	0.83[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9326893	0.83[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9326897	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9654519	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9885245	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs929774	YTHDC2	Cis_1M	lymphoblastoid	RTeQTL
rs929774	YTHDC2	cis	multi-tissue	Pritchard

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112848600-112850000	Active TSS	Rectal Mucosa Donor 29	rectum
2	chr5:112848600-112850200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:112848600-112850200	Active TSS	Colon Smooth Muscle	Colon
4	chr5:112848600-112850600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr5:112848600-112850600	Active TSS	Duodenum Smooth Muscle	Duodenum
6	chr5:112848600-112850800	Active TSS	K562	blood
7	chr5:112848800-112849600	Active TSS	Right Atrium	heart
8	chr5:112848800-112850000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:112848800-112850000	Active TSS	iPS-18 Cell Line	embryonic stem cell
10	chr5:112848800-112850000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr5:112848800-112850000	Active TSS	Primary T cells from cord blood	blood
12	chr5:112848800-112850000	Active TSS	Primary hematopoietic stem cells short term culture	blood
13	chr5:112848800-112850000	Active TSS	Primary T helper cells fromperipheralblood	blood
14	chr5:112848800-112850000	Active TSS	Liver	Liver
15	chr5:112848800-112850000	Active TSS	Brain Germinal Matrix	brain
16	chr5:112848800-112850000	Active TSS	HUVEC	blood vessel
17	chr5:112848800-112850200	Active TSS	HUES48 Cell Line	embryonic stem cell
18	chr5:112848800-112850200	Active TSS	HUES64 Cell Line	embryonic stem cell
19	chr5:112848800-112850200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr5:112848800-112850200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr5:112848800-112850200	Active TSS	Brain Cingulate Gyrus	brain
22	chr5:112848800-112850200	Active TSS	Brain Hippocampus Middle	brain
23	chr5:112848800-112850200	Active TSS	Brain Substantia Nigra	brain
24	chr5:112848800-112850200	Active TSS	Duodenum Mucosa	Duodenum
25	chr5:112848800-112850200	Active TSS	Fetal Brain Male	brain
26	chr5:112848800-112850200	Active TSS	Fetal Kidney	kidney
27	chr5:112848800-112850200	Active TSS	Left Ventricle	heart
28	chr5:112848800-112850200	Active TSS	Rectal Smooth Muscle	rectum
29	chr5:112848800-112850200	Active TSS	Hela-S3	cervix
30	chr5:112848800-112850400	Active TSS	Aorta	Aorta
31	chr5:112848800-112850400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
32	chr5:112848800-112850400	Active TSS	Psoas Muscle	Psoas
33	chr5:112848800-112850600	Active TSS	ES-I3 Cell Line	embryonic stem cell
34	chr5:112848800-112850600	Active TSS	iPS-15b Cell Line	embryonic stem cell
35	chr5:112848800-112850600	Active TSS	iPS-20b Cell Line	embryonic stem cell
36	chr5:112848800-112850600	Active TSS	Brain Angular Gyrus	brain
37	chr5:112848800-112850600	Active TSS	Brain Inferior Temporal Lobe	brain
38	chr5:112848800-112850600	Active TSS	Right Ventricle	heart
39	chr5:112848800-112850600	Active TSS	Stomach Smooth Muscle	stomach
40	chr5:112848800-112851000	Active TSS	A549	lung
41	chr5:112848800-112851400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr5:112849000-112849800	Active TSS	Primary B cells from cord blood	blood
43	chr5:112849000-112849800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr5:112849000-112849800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr5:112849000-112850000	Active TSS	Primary monocytes fromperipheralblood	blood
46	chr5:112849000-112850000	Active TSS	Primary T cells fromperipheralblood	blood
47	chr5:112849000-112850000	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
48	chr5:112849000-112850000	Active TSS	Primary T killer naive cells fromperipheralblood	blood
49	chr5:112849000-112850000	Active TSS	Primary T killer memory cells from peripheral blood	blood
50	chr5:112849000-112850000	Active TSS	Cortex derived primary cultured neurospheres	brain

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