Variant report

Variant	rs10063334
Chromosome Location	chr5:112760874-112760875
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10035293	0.82[CHB][hapmap]
rs10038504	1.00[CHB][hapmap]
rs10043783	1.00[CHB][hapmap]
rs10043834	0.85[CHB][hapmap]
rs10053052	1.00[CHB][hapmap]
rs10053157	1.00[CHB][hapmap]
rs10053622	1.00[CHB][hapmap]
rs10055327	1.00[CHB][hapmap]
rs10057264	1.00[CHB][hapmap]
rs10066163	1.00[CHB][hapmap]
rs10066985	0.86[CHB][hapmap]
rs10074538	0.93[EUR][1000 genomes]
rs11241204	0.88[CHB][hapmap]
rs11750488	0.86[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs11952758	1.00[CHB][hapmap]
rs11960559	1.00[CHB][hapmap]
rs13157360	0.86[CHB][hapmap]
rs13182505	0.86[CHB][hapmap]
rs13354840	1.00[CHB][hapmap]
rs1353100	0.88[CHB][hapmap]
rs17135581	0.86[CHB][hapmap]
rs17135586	0.85[CHB][hapmap]
rs17135601	0.85[CHB][hapmap]
rs17135607	0.85[CHB][hapmap]
rs17135618	1.00[CHB][hapmap]
rs3842916	1.00[CHB][hapmap]
rs3842917	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3843500	0.85[CHB][hapmap]
rs3843501	1.00[CHB][hapmap]
rs3857436	1.00[CHB][hapmap]
rs41459745	1.00[CHB][hapmap]
rs4705820	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4705821	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4705823	0.88[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs57530930	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60810500	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6594718	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6594719	0.90[ASN][1000 genomes]
rs6594720	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6864278	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6879370	1.00[CHB][hapmap]
rs7705430	1.00[CHB][hapmap]
rs7706796	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7709110	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7709550	1.00[CHB][hapmap]
rs7709818	1.00[CHB][hapmap]
rs7715884	1.00[CHB][hapmap]
rs7719254	1.00[CHB][hapmap]
rs7722421	1.00[CHB][hapmap]
rs7730801	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7737155	0.86[CHB][hapmap]
rs882755	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10063334	YTHDC2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112753600-112761000	Weak transcription	HMEC	breast
2	chr5:112758000-112761400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr5:112759000-112761000	Weak transcription	NHEK	skin
4	chr5:112759200-112761400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:112759200-112761400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr5:112760800-112761600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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