Variant report

Variant	rs41459745
Chromosome Location	chr5:112769541-112769542
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10035293	0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10038504	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10040616	0.88[CHB][hapmap]
rs10043783	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10043834	0.85[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10052747	0.87[ASN][1000 genomes]
rs10053052	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10053157	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10053622	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10055327	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10057000	0.96[ASN][1000 genomes]
rs10057264	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10057372	1.00[ASN][1000 genomes]
rs10060179	0.96[ASN][1000 genomes]
rs10063334	1.00[CHB][hapmap]
rs10066163	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10066985	0.88[CHB][hapmap];0.84[CHD][hapmap]
rs10078576	0.93[ASN][1000 genomes]
rs10155616	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10440762	1.00[JPT][hapmap]
rs10477492	1.00[ASN][1000 genomes]
rs10478123	1.00[ASN][1000 genomes]
rs10478124	1.00[ASN][1000 genomes]
rs10519341	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs11241204	0.88[CHB][hapmap]
rs11950577	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs11952758	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11953401	1.00[ASN][1000 genomes]
rs11960559	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12332461	1.00[JPT][hapmap]
rs12652864	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12656898	1.00[AMR][1000 genomes]
rs12659593	1.00[AMR][1000 genomes]
rs13157360	0.88[CHB][hapmap];0.84[CHD][hapmap]
rs13182505	0.88[CHB][hapmap];0.84[CHD][hapmap]
rs13354840	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13355687	1.00[ASN][1000 genomes]
rs13356388	0.91[ASN][1000 genomes]
rs13358111	1.00[ASN][1000 genomes]
rs1353100	0.88[CHB][hapmap]
rs1582487	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs17135473	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs17135525	0.95[EUR][1000 genomes]
rs17135541	1.00[EUR][1000 genomes]
rs17135581	0.88[CHB][hapmap];0.84[CHD][hapmap]
rs17135586	0.84[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17135601	0.84[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17135607	0.84[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17135615	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17135618	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17135647	1.00[AMR][1000 genomes]
rs1816063	1.00[AMR][1000 genomes]
rs1822487	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[EUR][1000 genomes]
rs1822494	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2222145	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28566618	0.96[ASN][1000 genomes]
rs28714108	0.96[ASN][1000 genomes]
rs28793421	0.96[ASN][1000 genomes]
rs2900070	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34936289	1.00[ASN][1000 genomes]
rs35724644	1.00[ASN][1000 genomes]
rs3842916	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs3843500	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3843501	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs3857436	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4345310	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs4583882	0.84[CHD][hapmap]
rs55912732	1.00[ASN][1000 genomes]
rs56081130	1.00[ASN][1000 genomes]
rs56090613	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59073951	0.87[EUR][1000 genomes]
rs59211196	1.00[ASN][1000 genomes]
rs6594702	1.00[ASN][1000 genomes]
rs6871668	0.84[ASW][hapmap];1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs6871995	1.00[ASN][1000 genomes]
rs6879177	1.00[JPT][hapmap]
rs6879370	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs73779003	1.00[ASN][1000 genomes]
rs73779004	1.00[ASN][1000 genomes]
rs73779005	1.00[ASN][1000 genomes]
rs73779006	1.00[ASN][1000 genomes]
rs7705430	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7705568	1.00[ASN][1000 genomes]
rs7709433	0.96[ASN][1000 genomes]
rs7709550	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7709818	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7715071	1.00[ASN][1000 genomes]
rs7715884	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7719254	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7722421	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7726631	1.00[ASN][1000 genomes]
rs7731451	1.00[JPT][hapmap]
rs7735806	0.98[ASN][1000 genomes]
rs7737155	0.88[CHB][hapmap];0.84[CHD][hapmap]
rs882755	0.84[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112762000-112786000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:112764400-112779200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:112764600-112786400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:112764800-112786800	Weak transcription	NHEK	skin
5	chr5:112768400-112770600	Weak transcription	Right Ventricle	heart
6	chr5:112769000-112769800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr5:112769000-112770400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr5:112769200-112769600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr5:112769400-112770600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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