Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:112815129..112817278-chr5:112821546..112824225,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10035297	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10042141	0.81[EUR][1000 genomes]
rs10070825	0.84[ASN][1000 genomes]
rs10155616	0.81[EUR][1000 genomes]
rs10477494	0.84[ASN][1000 genomes]
rs11950116	0.81[EUR][1000 genomes]
rs11950577	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12332461	0.83[ASN][1000 genomes]
rs12652864	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12656898	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13356509	0.84[ASN][1000 genomes]
rs1582487	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17135586	1.00[AMR][1000 genomes]
rs17135601	1.00[AMR][1000 genomes]
rs17135607	1.00[AMR][1000 genomes]
rs17135615	1.00[AMR][1000 genomes]
rs17135647	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1816063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2222145	1.00[AMR][1000 genomes]
rs2900070	1.00[AMR][1000 genomes]
rs36009332	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs36015377	0.83[ASN][1000 genomes]
rs3843500	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs41459745	1.00[AMR][1000 genomes]
rs4345310	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56090613	0.90[EUR][1000 genomes]
rs6866028	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6879177	0.84[ASN][1000 genomes]
rs7719254	0.86[EUR][1000 genomes]
rs7731451	0.84[ASN][1000 genomes]
rs9654506	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112810200-112823000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr5:112813400-112822800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:112820600-112823000	Weak transcription	Right Ventricle	heart
4	chr5:112821800-112822400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr5:112821800-112823000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr5:112822000-112824400	Active TSS	HMEC	breast
7	chr5:112822200-112822400	Flanking Active TSS	NHEK	skin
8	chr5:112822200-112822600	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:112822200-112822800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr5:112822200-112824600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin

Quick Search: