Variant report

Variant	rs12656898
Chromosome Location	chr5:112865859-112865860
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10035297	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10042141	1.00[EUR][1000 genomes]
rs10070825	0.84[ASN][1000 genomes]
rs10155616	1.00[EUR][1000 genomes]
rs10477494	0.84[ASN][1000 genomes]
rs11950116	1.00[EUR][1000 genomes]
rs11950577	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12332461	0.87[ASN][1000 genomes]
rs12652864	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12653115	0.81[EUR][1000 genomes]
rs12659463	0.81[EUR][1000 genomes]
rs12659593	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13356509	0.84[ASN][1000 genomes]
rs1582487	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17135586	1.00[AMR][1000 genomes]
rs17135601	1.00[AMR][1000 genomes]
rs17135607	1.00[AMR][1000 genomes]
rs17135615	1.00[AMR][1000 genomes]
rs17135647	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1816063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2222145	1.00[AMR][1000 genomes]
rs2900070	1.00[AMR][1000 genomes]
rs36009332	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs36015377	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3763136	0.81[EUR][1000 genomes]
rs3843500	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs41459745	1.00[AMR][1000 genomes]
rs4345310	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56090613	0.90[EUR][1000 genomes]
rs58014465	0.81[EUR][1000 genomes]
rs6866028	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6879177	0.84[ASN][1000 genomes]
rs7719254	0.86[EUR][1000 genomes]
rs7731451	0.84[ASN][1000 genomes]
rs9654506	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882720	chr5:112859994-112911165	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv882721	chr5:112859994-112963488	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv969205	chr5:112860167-112867961	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112850400-112866600	Weak transcription	Esophagus	oesophagus
2	chr5:112850400-112866600	Weak transcription	Placenta	Placenta
3	chr5:112850400-112866800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr5:112850400-112866800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr5:112850400-112866800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr5:112850400-112866800	Weak transcription	Aorta	Aorta
7	chr5:112850400-112866800	Weak transcription	Lung	lung
8	chr5:112850400-112867000	Weak transcription	Pancreas	Pancrea
9	chr5:112850400-112879000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr5:112850400-112879200	Weak transcription	Gastric	stomach
11	chr5:112850400-112904000	Weak transcription	Psoas Muscle	Psoas
12	chr5:112850600-112866600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr5:112850600-112866600	Weak transcription	Duodenum Mucosa	Duodenum
14	chr5:112850600-112867600	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr5:112850600-112868600	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr5:112850600-112874800	Weak transcription	Stomach Smooth Muscle	stomach
17	chr5:112850600-112879200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr5:112850600-112908400	Weak transcription	Colonic Mucosa	Colon
19	chr5:112851400-112866800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr5:112851400-112879000	Weak transcription	Brain Cingulate Gyrus	brain
21	chr5:112851600-112866600	Weak transcription	Small Intestine	intestine
22	chr5:112851600-112866800	Weak transcription	NHLF	lung
23	chr5:112851600-112893200	Weak transcription	Fetal Brain Male	brain
24	chr5:112851600-112902800	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr5:112851800-112866800	Weak transcription	NH-A	brain
26	chr5:112852200-112866600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr5:112852400-112866000	Weak transcription	Adipose Nuclei	Adipose
28	chr5:112852400-112866600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr5:112852400-112878800	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr5:112852400-112882200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr5:112852400-112882200	Weak transcription	Fetal Heart	heart
32	chr5:112853200-112882400	Weak transcription	Brain Angular Gyrus	brain
33	chr5:112853600-112866600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr5:112854200-112866800	Weak transcription	Fetal Stomach	stomach
35	chr5:112854800-112866200	Weak transcription	Fetal Lung	lung
36	chr5:112855600-112866600	Weak transcription	HSMMtube	muscle
37	chr5:112856600-112866000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr5:112856600-112866600	Weak transcription	Ovary	ovary
39	chr5:112856600-112867800	Weak transcription	HMEC	breast
40	chr5:112856800-112866600	Weak transcription	Brain Germinal Matrix	brain
41	chr5:112856800-112866600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr5:112856800-112866600	Weak transcription	Fetal Muscle Leg	muscle
43	chr5:112856800-112866800	Weak transcription	Fetal Brain Female	brain
44	chr5:112856800-112866800	Weak transcription	Left Ventricle	heart
45	chr5:112857000-112866200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr5:112857000-112866200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr5:112857000-112866200	Weak transcription	NHEK	skin
48	chr5:112857000-112866600	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr5:112857000-112866600	Weak transcription	Liver	Liver
50	chr5:112857000-112866600	Weak transcription	Fetal Muscle Trunk	muscle

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