Variant report

Variant	rs17135607
Chromosome Location	chr5:112742028-112742029
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10035293	0.81[ASN][1000 genomes]
rs10038504	0.86[CHB][hapmap];0.87[ASN][1000 genomes]
rs10043783	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs10043834	0.81[ASN][1000 genomes]
rs10053052	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs10053157	0.86[CHB][hapmap];0.87[ASN][1000 genomes]
rs10053622	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs10055327	0.86[CHB][hapmap];0.87[ASN][1000 genomes]
rs10057000	0.82[ASN][1000 genomes]
rs10057264	0.86[CHB][hapmap];0.87[ASN][1000 genomes]
rs10057372	0.87[ASN][1000 genomes]
rs10060179	0.82[ASN][1000 genomes]
rs10063334	0.85[CHB][hapmap]
rs10066163	0.86[CHB][hapmap];0.87[ASN][1000 genomes]
rs10078576	0.81[ASN][1000 genomes]
rs10155616	1.00[CEU][hapmap]
rs10477492	0.87[ASN][1000 genomes]
rs10478123	0.87[ASN][1000 genomes]
rs10478124	0.87[ASN][1000 genomes]
rs10519341	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.90[LWK][hapmap];0.96[MKK][hapmap];0.95[EUR][1000 genomes]
rs11950577	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs11952758	0.86[CHB][hapmap];0.87[ASN][1000 genomes]
rs11953401	0.87[ASN][1000 genomes]
rs11960559	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs12652864	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12656898	1.00[AMR][1000 genomes]
rs12659593	1.00[AMR][1000 genomes]
rs13354840	0.86[CHB][hapmap];0.87[ASN][1000 genomes]
rs13355687	0.87[ASN][1000 genomes]
rs13358111	0.87[ASN][1000 genomes]
rs1582487	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs17135473	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs17135525	0.95[EUR][1000 genomes]
rs17135541	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17135586	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17135601	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17135615	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17135618	0.86[CHB][hapmap];0.87[ASN][1000 genomes]
rs17135647	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17376277	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs1816063	1.00[AMR][1000 genomes]
rs1822487	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1822494	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[EUR][1000 genomes]
rs2222145	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28566618	0.82[ASN][1000 genomes]
rs28714108	0.82[ASN][1000 genomes]
rs28793421	0.82[ASN][1000 genomes]
rs2900070	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34936289	0.87[ASN][1000 genomes]
rs35724644	0.87[ASN][1000 genomes]
rs3842916	0.85[CHB][hapmap]
rs3843500	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3843501	0.84[CHB][hapmap];0.81[ASN][1000 genomes]
rs3857436	0.85[CHB][hapmap];0.81[ASN][1000 genomes]
rs41420244	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap]
rs41459745	0.84[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4345310	1.00[CEU][hapmap]
rs55912732	0.87[ASN][1000 genomes]
rs56081130	0.87[ASN][1000 genomes]
rs56090613	0.86[EUR][1000 genomes]
rs589147	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs59073951	0.87[EUR][1000 genomes]
rs59211196	0.87[ASN][1000 genomes]
rs6594702	0.87[ASN][1000 genomes]
rs6871668	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.89[MKK][hapmap];0.95[EUR][1000 genomes]
rs6871995	0.87[ASN][1000 genomes]
rs6879370	0.86[CHB][hapmap];0.87[ASN][1000 genomes]
rs73779003	0.87[ASN][1000 genomes]
rs73779004	0.87[ASN][1000 genomes]
rs73779005	0.87[ASN][1000 genomes]
rs73779006	0.87[ASN][1000 genomes]
rs7705430	0.86[CHB][hapmap];0.87[ASN][1000 genomes]
rs7705568	0.87[ASN][1000 genomes]
rs7709433	0.83[ASN][1000 genomes]
rs7709550	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs7709818	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs7715071	0.87[ASN][1000 genomes]
rs7715884	0.86[CHB][hapmap];0.87[ASN][1000 genomes]
rs7719254	0.82[EUR][1000 genomes]
rs7722421	0.86[CHB][hapmap];0.87[ASN][1000 genomes]
rs7726631	0.87[ASN][1000 genomes]
rs7735806	0.89[ASN][1000 genomes]
rs882755	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112724400-112751200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:112741000-112742200	Weak transcription	Fetal Heart	heart
3	chr5:112741400-112746400	Weak transcription	Pancreas	Pancrea

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