Variant report

Variant	rs13358111
Chromosome Location	chr5:112740040-112740041
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10035293	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10038504	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10043783	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10043834	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10052747	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10053052	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10053157	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10053622	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10055327	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10057000	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10057264	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10057372	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10060179	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10066163	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10070825	0.85[EUR][1000 genomes]
rs10078576	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10477492	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10477493	0.90[EUR][1000 genomes]
rs10477494	0.90[EUR][1000 genomes]
rs10478123	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10478124	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11952758	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11953401	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11960559	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13354840	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13355687	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13356388	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17135465	0.85[EUR][1000 genomes]
rs17135586	0.87[ASN][1000 genomes]
rs17135601	0.87[ASN][1000 genomes]
rs17135607	0.87[ASN][1000 genomes]
rs17135615	0.87[ASN][1000 genomes]
rs17135618	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2222145	0.87[ASN][1000 genomes]
rs28566618	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28714108	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28793421	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2900070	0.85[ASN][1000 genomes]
rs34893422	0.85[EUR][1000 genomes]
rs34936289	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35724644	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3842916	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3843500	0.80[ASN][1000 genomes]
rs3843501	0.93[ASN][1000 genomes]
rs3857436	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41459745	1.00[ASN][1000 genomes]
rs55912732	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56081130	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56090613	0.85[ASN][1000 genomes]
rs59211196	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6594702	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6871995	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6879177	0.85[EUR][1000 genomes]
rs6879370	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73779003	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73779004	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73779005	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73779006	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7705430	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7705568	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7709433	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7709550	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7709818	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7715071	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7715884	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7719254	0.83[ASN][1000 genomes]
rs7722421	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7726631	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7731451	0.80[EUR][1000 genomes]
rs7735806	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9654506	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112724400-112751200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:112739200-112740800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:112739800-112740600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:112739800-112741200	Enhancers	Liver	Liver

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