Variant report

Variant	rs9654506
Chromosome Location	chr5:112845984-112845985
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10035293	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10035297	0.98[ASN][1000 genomes]
rs10038504	0.80[EUR][1000 genomes]
rs10042141	0.90[ASN][1000 genomes]
rs10043783	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10043834	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10052747	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10053157	0.80[EUR][1000 genomes]
rs10053622	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10055327	0.80[EUR][1000 genomes]
rs10057000	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10057264	0.80[EUR][1000 genomes]
rs10057372	0.80[EUR][1000 genomes]
rs10060179	0.80[EUR][1000 genomes]
rs10065676	0.83[EUR][1000 genomes]
rs10066163	0.80[EUR][1000 genomes]
rs10070825	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10075927	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10078576	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10155616	0.90[ASN][1000 genomes]
rs10440762	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10477492	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10477493	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10477494	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10478123	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10478124	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10478133	0.81[EUR][1000 genomes]
rs10478134	0.83[EUR][1000 genomes]
rs11950116	0.90[ASN][1000 genomes]
rs11950577	0.98[ASN][1000 genomes]
rs11950886	0.83[EUR][1000 genomes]
rs11952758	0.80[EUR][1000 genomes]
rs11953401	0.80[EUR][1000 genomes]
rs11960559	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12332461	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12656898	0.84[ASN][1000 genomes]
rs12659593	0.84[ASN][1000 genomes]
rs13354840	0.80[EUR][1000 genomes]
rs13355687	0.80[EUR][1000 genomes]
rs13356509	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13358111	0.80[EUR][1000 genomes]
rs13436247	0.83[EUR][1000 genomes]
rs1582487	0.88[ASN][1000 genomes]
rs17135618	0.80[EUR][1000 genomes]
rs1816063	0.88[ASN][1000 genomes]
rs2303718	0.83[EUR][1000 genomes]
rs28414260	0.83[EUR][1000 genomes]
rs28566618	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28714108	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28793421	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34936289	0.80[EUR][1000 genomes]
rs35724644	0.80[EUR][1000 genomes]
rs36009332	0.98[ASN][1000 genomes]
rs36015377	0.98[ASN][1000 genomes]
rs3842916	0.81[ASN][1000 genomes]
rs3843501	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3857436	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4345310	0.98[ASN][1000 genomes]
rs55912732	0.80[EUR][1000 genomes]
rs56081130	0.80[EUR][1000 genomes]
rs56090613	0.84[ASN][1000 genomes]
rs59211196	0.80[EUR][1000 genomes]
rs6594702	0.80[EUR][1000 genomes]
rs6866028	0.96[ASN][1000 genomes]
rs6879177	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6879370	0.80[EUR][1000 genomes]
rs73779003	0.80[EUR][1000 genomes]
rs73779004	0.80[EUR][1000 genomes]
rs73779005	0.80[EUR][1000 genomes]
rs73779006	0.80[EUR][1000 genomes]
rs7705430	0.80[EUR][1000 genomes]
rs7705568	0.80[EUR][1000 genomes]
rs7709433	0.80[EUR][1000 genomes]
rs7709550	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7709818	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7715071	0.80[EUR][1000 genomes]
rs7715884	0.80[EUR][1000 genomes]
rs7719254	0.82[ASN][1000 genomes]
rs7722421	0.80[EUR][1000 genomes]
rs7726631	0.80[EUR][1000 genomes]
rs7731451	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7735806	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112841400-112847800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:112841400-112848000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr5:112841600-112847000	Weak transcription	NHEK	skin
4	chr5:112844600-112848000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr5:112844800-112848800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr5:112845000-112847800	Weak transcription	HMEC	breast
7	chr5:112845000-112848800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr5:112845200-112847600	Weak transcription	Aorta	Aorta
9	chr5:112845200-112848600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr5:112845400-112848600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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