Variant report

Variant	rs6866028
Chromosome Location	chr5:112855825-112855826
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:112855510..112858323-chr5:112860462..112863190,3	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10035293	0.81[ASN][1000 genomes]
rs10035297	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10042141	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10043834	0.81[ASN][1000 genomes]
rs10070825	0.96[ASN][1000 genomes]
rs10075927	0.87[ASN][1000 genomes]
rs10078576	0.81[ASN][1000 genomes]
rs10155616	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10440762	0.87[ASN][1000 genomes]
rs10477494	0.96[ASN][1000 genomes]
rs11950116	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11950577	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12332461	0.98[ASN][1000 genomes]
rs12652864	0.95[EUR][1000 genomes]
rs12653115	0.81[EUR][1000 genomes]
rs12656898	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12659463	0.81[EUR][1000 genomes]
rs12659593	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13356509	0.96[ASN][1000 genomes]
rs1582487	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17135647	0.82[EUR][1000 genomes]
rs1816063	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs36009332	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36015377	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3763136	0.81[EUR][1000 genomes]
rs3843500	0.86[EUR][1000 genomes]
rs3843501	0.81[ASN][1000 genomes]
rs3857436	0.81[ASN][1000 genomes]
rs4345310	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56090613	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58014465	0.81[EUR][1000 genomes]
rs6879177	0.96[ASN][1000 genomes]
rs73781720	0.89[AMR][1000 genomes]
rs7719254	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7731451	0.96[ASN][1000 genomes]
rs9654506	0.96[ASN][1000 genomes]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112850400-112856000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:112850400-112856200	Weak transcription	Ovary	ovary
3	chr5:112850400-112856200	Weak transcription	Thymus	Thymus
4	chr5:112850400-112857800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:112850400-112858200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr5:112850400-112863600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr5:112850400-112866600	Weak transcription	Esophagus	oesophagus
8	chr5:112850400-112866600	Weak transcription	Placenta	Placenta
9	chr5:112850400-112866800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr5:112850400-112866800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr5:112850400-112866800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr5:112850400-112866800	Weak transcription	Aorta	Aorta
13	chr5:112850400-112866800	Weak transcription	Lung	lung
14	chr5:112850400-112867000	Weak transcription	Pancreas	Pancrea
15	chr5:112850400-112879000	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr5:112850400-112879200	Weak transcription	Gastric	stomach
17	chr5:112850400-112904000	Weak transcription	Psoas Muscle	Psoas
18	chr5:112850600-112857600	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr5:112850600-112860600	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr5:112850600-112862000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr5:112850600-112865400	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr5:112850600-112865600	Weak transcription	Fetal Kidney	kidney
23	chr5:112850600-112866600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr5:112850600-112866600	Weak transcription	Duodenum Mucosa	Duodenum
25	chr5:112850600-112867600	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr5:112850600-112868600	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr5:112850600-112874800	Weak transcription	Stomach Smooth Muscle	stomach
28	chr5:112850600-112879200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr5:112850600-112908400	Weak transcription	Colonic Mucosa	Colon
30	chr5:112850800-112856200	Weak transcription	NHDF-Ad	bronchial
31	chr5:112850800-112856400	Weak transcription	Brain Germinal Matrix	brain
32	chr5:112851200-112856200	Weak transcription	HMEC	breast
33	chr5:112851200-112856800	Strong transcription	Fetal Muscle Leg	muscle
34	chr5:112851200-112857000	Strong transcription	Fetal Muscle Trunk	muscle
35	chr5:112851200-112858200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr5:112851400-112856600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr5:112851400-112856600	Strong transcription	K562	blood
38	chr5:112851400-112857000	Strong transcription	Primary monocytes fromperipheralblood	blood
39	chr5:112851400-112857000	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr5:112851400-112857000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr5:112851400-112858200	Weak transcription	Brain Anterior Caudate	brain
42	chr5:112851400-112858200	Weak transcription	Brain Substantia Nigra	brain
43	chr5:112851400-112859800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr5:112851400-112864400	Weak transcription	Hela-S3	cervix
45	chr5:112851400-112866800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr5:112851400-112879000	Weak transcription	Brain Cingulate Gyrus	brain
47	chr5:112851600-112856600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr5:112851600-112866600	Weak transcription	Small Intestine	intestine
49	chr5:112851600-112866800	Weak transcription	NHLF	lung
50	chr5:112851600-112893200	Weak transcription	Fetal Brain Male	brain

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