Variant report

Variant	rs10440762
Chromosome Location	chr5:112913934-112913935
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr5:112913857-112914161	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr5:112913859-112914165	MCF10A-Er-Src	breast:	n/a	n/a
3	FOS	chr5:112913870-112914161	MCF10A-Er-Src	breast:	n/a	n/a
4	FOS	chr5:112913866-112914165	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
YTHDC2	TF binding region

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10035293	1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs10035297	0.89[ASN][1000 genomes]
rs10038504	1.00[JPT][hapmap]
rs10042141	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10043783	1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs10043834	1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs10052747	0.86[AMR][1000 genomes]
rs10053052	1.00[JPT][hapmap]
rs10053157	1.00[JPT][hapmap]
rs10053622	1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs10055327	1.00[JPT][hapmap]
rs10057000	0.82[AMR][1000 genomes]
rs10057264	1.00[JPT][hapmap]
rs10065676	0.81[ASN][1000 genomes]
rs10066163	1.00[JPT][hapmap]
rs10070825	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10075927	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10078576	0.82[AMR][1000 genomes]
rs10155616	0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10477492	0.82[AMR][1000 genomes]
rs10477493	0.86[AMR][1000 genomes]
rs10477494	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10478123	0.82[AMR][1000 genomes]
rs10478124	0.82[AMR][1000 genomes]
rs11950116	0.96[ASN][1000 genomes]
rs11950577	0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11950886	0.81[ASN][1000 genomes]
rs11952758	1.00[JPT][hapmap]
rs11960559	1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs12332461	0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12652864	0.88[ASN][1000 genomes]
rs13354840	1.00[JPT][hapmap]
rs13356509	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13436247	0.87[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs1582487	0.81[CHB][hapmap]
rs17135618	1.00[JPT][hapmap]
rs2303718	0.90[CHB][hapmap];0.81[ASN][1000 genomes]
rs28414260	0.81[ASN][1000 genomes]
rs28566618	0.82[AMR][1000 genomes]
rs28714108	0.82[AMR][1000 genomes]
rs28793421	0.82[AMR][1000 genomes]
rs36009332	0.89[ASN][1000 genomes]
rs36015377	0.89[ASN][1000 genomes]
rs3842916	1.00[JPT][hapmap]
rs3843501	1.00[JPT][hapmap]
rs3857436	1.00[JPT][hapmap];0.86[AMR][1000 genomes]
rs41459745	1.00[JPT][hapmap]
rs4345310	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6866028	0.87[ASN][1000 genomes]
rs6879177	0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6879370	1.00[JPT][hapmap]
rs73781720	0.81[ASN][1000 genomes]
rs7705430	1.00[JPT][hapmap]
rs7709550	1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs7709818	1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs7715884	1.00[JPT][hapmap]
rs7719254	1.00[JPT][hapmap]
rs7722421	1.00[JPT][hapmap]
rs7731451	0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7735806	0.82[AMR][1000 genomes]
rs9654506	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882721	chr5:112859994-112963488	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv882724	chr5:112868878-112933202	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv1033202	chr5:112891857-112945992	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv520674	chr5:112911165-112942820	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112867400-112926000	Weak transcription	Small Intestine	intestine
2	chr5:112867400-112933000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr5:112870200-112930800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr5:112872000-112915000	Weak transcription	Hela-S3	cervix
5	chr5:112876000-112918800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr5:112889400-112930600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr5:112890600-112915800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr5:112892800-112915000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr5:112898200-112921200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr5:112899400-112929400	Weak transcription	HepG2	liver
11	chr5:112900400-112915800	Weak transcription	HUVEC	blood vessel
12	chr5:112903000-112917000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr5:112904400-112917200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr5:112904600-112934800	Weak transcription	Psoas Muscle	Psoas
15	chr5:112904800-112916200	Weak transcription	Fetal Heart	heart
16	chr5:112907200-112915600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr5:112907400-112915600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr5:112907400-112932000	Weak transcription	Rectal Smooth Muscle	rectum
19	chr5:112908800-112916000	Weak transcription	Fetal Brain Male	brain
20	chr5:112908800-112935200	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr5:112909600-112915600	Weak transcription	Fetal Kidney	kidney
22	chr5:112910200-112915600	Weak transcription	NHLF	lung
23	chr5:112910400-112915600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr5:112910400-112917200	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr5:112910600-112915200	Weak transcription	HSMM	muscle
26	chr5:112910600-112915200	Weak transcription	K562	blood
27	chr5:112910600-112915600	Weak transcription	Placenta	Placenta
28	chr5:112910600-112915800	Weak transcription	Brain Hippocampus Middle	brain
29	chr5:112910600-112915800	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr5:112910600-112916400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr5:112910600-112917000	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr5:112910600-112917000	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr5:112910600-112917000	Weak transcription	Brain Angular Gyrus	brain
34	chr5:112910600-112919800	Weak transcription	NHDF-Ad	bronchial
35	chr5:112910600-112920000	Weak transcription	Brain Anterior Caudate	brain
36	chr5:112910600-112927000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr5:112910600-112927600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr5:112910600-112927800	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr5:112910600-112933400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr5:112910600-112935200	Weak transcription	Spleen	Spleen
41	chr5:112910600-112935400	Weak transcription	Colon Smooth Muscle	Colon
42	chr5:112910600-112936600	Weak transcription	Colonic Mucosa	Colon
43	chr5:112910600-112942000	Weak transcription	Brain Substantia Nigra	brain
44	chr5:112910800-112915200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr5:112910800-112915200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr5:112910800-112915200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr5:112910800-112915200	Weak transcription	Fetal Brain Female	brain
48	chr5:112910800-112915200	Weak transcription	Fetal Intestine Large	intestine
49	chr5:112910800-112915200	Weak transcription	Fetal Muscle Trunk	muscle
50	chr5:112910800-112915200	Weak transcription	Lung	lung

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