Variant report

Variant	rs10065676
Chromosome Location	chr5:112946857-112946858
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10035293	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10038504	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10043783	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10043834	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10053052	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10053157	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10053622	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10055327	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10057264	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10066163	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10075927	0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs10155616	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10440762	0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10478133	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10478134	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11950577	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11950886	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11952758	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs11960559	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs12332461	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12652864	0.81[CHB][hapmap]
rs13356509	0.85[EUR][1000 genomes]
rs13436247	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1582487	0.90[CHB][hapmap]
rs17135618	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2303718	1.00[CHB][hapmap];0.81[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28414260	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3763136	0.88[ASN][1000 genomes]
rs3842916	1.00[JPT][hapmap]
rs3843501	1.00[JPT][hapmap]
rs3857436	1.00[JPT][hapmap]
rs41459745	1.00[JPT][hapmap]
rs4345310	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs57112456	0.80[ASN][1000 genomes]
rs6879177	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6879370	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7709550	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7709818	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7719254	1.00[JPT][hapmap]
rs7722421	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7731451	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs9654506	0.83[EUR][1000 genomes]
rs9885399	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882721	chr5:112859994-112963488	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
2	esv2763910	chr5:112916398-112951827	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv1031336	chr5:112916398-112956588	Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv4961	chr5:112945908-112991152	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112944200-112949000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr5:112944400-112950000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr5:112944400-112950000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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