Variant report

Variant	rs13356388
Chromosome Location	chr5:112737714-112737715
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10035293	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10038504	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10043783	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10043834	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10052747	0.88[EUR][1000 genomes]
rs10053052	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10053157	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10053622	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10055327	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10057000	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10057264	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10057372	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10060179	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10066163	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10078576	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10477492	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10477493	0.83[EUR][1000 genomes]
rs10477494	0.83[EUR][1000 genomes]
rs10478123	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10478124	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11952758	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11953401	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11960559	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13354840	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13355687	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13358111	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17135618	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28566618	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28714108	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28793421	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34936289	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35724644	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3842916	0.81[ASN][1000 genomes]
rs3843501	0.85[ASN][1000 genomes]
rs3857436	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs41459745	0.91[ASN][1000 genomes]
rs55912732	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56081130	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59211196	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6594702	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6871995	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6879370	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73779003	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73779004	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73779005	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73779006	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7705430	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7705568	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7709433	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7709550	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7709818	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7715071	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7715884	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7722421	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7726631	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7735806	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112724400-112751200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:112730200-112738200	Weak transcription	HMEC	breast
3	chr5:112734400-112739200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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