Variant report

Variant	rs17135615
Chromosome Location	chr5:112754507-112754508
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10035293	0.81[ASN][1000 genomes]
rs10038504	0.87[ASN][1000 genomes]
rs10043783	0.82[ASN][1000 genomes]
rs10043834	0.81[ASN][1000 genomes]
rs10053052	0.87[ASN][1000 genomes]
rs10053157	0.87[ASN][1000 genomes]
rs10053622	0.82[ASN][1000 genomes]
rs10055327	0.87[ASN][1000 genomes]
rs10057000	0.82[ASN][1000 genomes]
rs10057264	0.87[ASN][1000 genomes]
rs10057372	0.87[ASN][1000 genomes]
rs10060179	0.82[ASN][1000 genomes]
rs10066163	0.87[ASN][1000 genomes]
rs10078576	0.81[ASN][1000 genomes]
rs10477492	0.87[ASN][1000 genomes]
rs10478123	0.87[ASN][1000 genomes]
rs10478124	0.87[ASN][1000 genomes]
rs10519341	0.95[EUR][1000 genomes]
rs11952758	0.87[ASN][1000 genomes]
rs11953401	0.87[ASN][1000 genomes]
rs11960559	0.82[ASN][1000 genomes]
rs12652864	1.00[AMR][1000 genomes]
rs12656898	1.00[AMR][1000 genomes]
rs12659593	1.00[AMR][1000 genomes]
rs13354840	0.87[ASN][1000 genomes]
rs13355687	0.87[ASN][1000 genomes]
rs13358111	0.87[ASN][1000 genomes]
rs1582487	1.00[AMR][1000 genomes]
rs17135473	0.95[EUR][1000 genomes]
rs17135525	0.95[EUR][1000 genomes]
rs17135541	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17135586	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17135601	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17135607	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17135618	0.87[ASN][1000 genomes]
rs17135647	1.00[AMR][1000 genomes]
rs17376277	0.87[EUR][1000 genomes]
rs1816063	1.00[AMR][1000 genomes]
rs1822487	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1822494	1.00[EUR][1000 genomes]
rs2222145	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28566618	0.82[ASN][1000 genomes]
rs28714108	0.82[ASN][1000 genomes]
rs28793421	0.82[ASN][1000 genomes]
rs2900070	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34936289	0.87[ASN][1000 genomes]
rs35724644	0.87[ASN][1000 genomes]
rs3843500	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3843501	0.81[ASN][1000 genomes]
rs3857436	0.81[ASN][1000 genomes]
rs41459745	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55912732	0.87[ASN][1000 genomes]
rs56081130	0.87[ASN][1000 genomes]
rs56090613	0.86[EUR][1000 genomes]
rs59073951	0.87[EUR][1000 genomes]
rs59211196	0.87[ASN][1000 genomes]
rs6594702	0.87[ASN][1000 genomes]
rs6871668	0.95[EUR][1000 genomes]
rs6871995	0.87[ASN][1000 genomes]
rs6879370	0.87[ASN][1000 genomes]
rs73779003	0.87[ASN][1000 genomes]
rs73779004	0.87[ASN][1000 genomes]
rs73779005	0.87[ASN][1000 genomes]
rs73779006	0.87[ASN][1000 genomes]
rs7705430	0.87[ASN][1000 genomes]
rs7705568	0.87[ASN][1000 genomes]
rs7709433	0.83[ASN][1000 genomes]
rs7709550	0.82[ASN][1000 genomes]
rs7709818	0.82[ASN][1000 genomes]
rs7715071	0.87[ASN][1000 genomes]
rs7715884	0.87[ASN][1000 genomes]
rs7719254	0.82[EUR][1000 genomes]
rs7722421	0.87[ASN][1000 genomes]
rs7726631	0.87[ASN][1000 genomes]
rs7735806	0.89[ASN][1000 genomes]
rs882755	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv329948	chr5:112754124-112755837	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112752000-112758200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:112753600-112761000	Weak transcription	HMEC	breast

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