Variant report

Variant	rs7737155
Chromosome Location	chr5:112718730-112718731
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10038504	0.88[CHB][hapmap]
rs10040616	1.00[CHB][hapmap];0.89[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10043783	0.88[CHB][hapmap];0.84[CHD][hapmap]
rs10053052	0.86[CHB][hapmap]
rs10053157	0.88[CHB][hapmap];0.84[CHD][hapmap]
rs10053622	0.88[CHB][hapmap]
rs10055327	0.88[CHB][hapmap]
rs10057264	0.88[CHB][hapmap]
rs10063334	0.86[CHB][hapmap]
rs10066163	0.88[CHB][hapmap]
rs10066985	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11241204	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11952758	0.88[CHB][hapmap];0.84[CHD][hapmap]
rs11960559	0.88[CHB][hapmap]
rs13157360	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13162970	0.81[CEU][hapmap]
rs13182505	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13185592	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13354840	0.88[CHB][hapmap];0.84[CHD][hapmap]
rs1353100	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17135581	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17135618	0.88[CHB][hapmap];0.84[CHD][hapmap]
rs255869	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs255875	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs26965	0.81[CEU][hapmap]
rs34561076	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3842916	0.86[CHB][hapmap]
rs3843501	0.86[CHB][hapmap]
rs3857436	0.86[CHB][hapmap]
rs41459745	0.88[CHB][hapmap];0.84[CHD][hapmap]
rs4583882	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60702346	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6879370	0.88[CHB][hapmap]
rs7701757	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7705430	0.88[CHB][hapmap];0.84[CHD][hapmap]
rs7709550	0.88[CHB][hapmap]
rs7709818	0.88[CHB][hapmap];0.84[CHD][hapmap]
rs7715884	0.88[CHB][hapmap]
rs7719254	0.82[CHB][hapmap]
rs7722421	0.88[CHB][hapmap];0.84[CHD][hapmap]
rs7731564	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv949165	chr5:112615626-112730216	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7737155	YTHDC2	cis	cerebellum	SCAN
rs7737155	MANBA	trans	cerebellum	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112707800-112719000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr5:112715000-112720600	Weak transcription	Aorta	Aorta
3	chr5:112716200-112719400	Enhancers	HMEC	breast
4	chr5:112716400-112719400	Enhancers	Muscle Satellite Cultured Cells	--
5	chr5:112716400-112719800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr5:112716800-112720600	Weak transcription	Stomach Mucosa	stomach
7	chr5:112717000-112729400	Weak transcription	Fetal Stomach	stomach
8	chr5:112717400-112719200	Enhancers	NHEK	skin
9	chr5:112717400-112719400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr5:112718000-112718800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr5:112718000-112719000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr5:112718200-112719200	Enhancers	HUVEC	blood vessel
13	chr5:112718200-112719400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr5:112718200-112720400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr5:112718400-112718800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr5:112718400-112719000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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