Variant report

Variant	rs59958506
Chromosome Location	chr6:143648753-143648754
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PEX3-2	chr6:143648412-143648792	NONHSAT115342

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs9321901	1.00[AFR][1000 genomes]
rs9484728	1.00[AFR][1000 genomes]
rs9484729	1.00[AFR][1000 genomes]
rs9496587	1.00[AFR][1000 genomes]
rs9496601	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv965775	chr6:143647477-143649850	Weak transcription Enhancers Genic enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143642600-143675600	Weak transcription	Left Ventricle	heart
2	chr6:143643800-143653600	Weak transcription	Ovary	ovary
3	chr6:143643800-143661200	Weak transcription	Aorta	Aorta
4	chr6:143644600-143650400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:143644800-143652200	Enhancers	HMEC	breast
6	chr6:143645000-143683200	Weak transcription	Pancreas	Pancrea
7	chr6:143645200-143656800	Weak transcription	Psoas Muscle	Psoas
8	chr6:143645800-143653600	Weak transcription	Fetal Stomach	stomach
9	chr6:143645800-143655600	Weak transcription	Fetal Brain Female	brain
10	chr6:143646000-143664000	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr6:143646800-143650400	Weak transcription	Hela-S3	cervix
12	chr6:143647200-143654200	Weak transcription	HepG2	liver
13	chr6:143647200-143657400	Weak transcription	NHLF	lung
14	chr6:143647400-143650200	Weak transcription	NH-A	brain
15	chr6:143647400-143654000	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr6:143647400-143658200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr6:143647600-143649800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:143647600-143650200	Weak transcription	HUVEC	blood vessel
19	chr6:143647600-143650200	Weak transcription	NHDF-Ad	bronchial
20	chr6:143647600-143654000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr6:143648200-143648800	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:143648400-143648800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr6:143648600-143648800	Genic enhancers	NHEK	skin
24	chr6:143648600-143654200	Weak transcription	Liver	Liver

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