Variant report
| Variant | rs59975834 |
|---|---|
| Chromosome Location | chr2:115822241-115822242 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-ACTR3-4 | chr2:115822150-115822382 | NONHSAT073868 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs11123274 | 0.84[AFR][1000 genomes] |
| rs11896753 | 0.87[AFR][1000 genomes] |
| rs17043991 | 0.85[AFR][1000 genomes] |
| rs17043996 | 0.84[AFR][1000 genomes] |
| rs1876863 | 0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs58962358 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72949792 | 0.89[AFR][1000 genomes] |
| rs72949797 | 0.88[AFR][1000 genomes] |
| rs72949799 | 0.88[AFR][1000 genomes] |
| rs966858 | 0.87[AFR][1000 genomes] |
| rs966859 | 0.87[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv459030 | chr2:115800609-115834653 | Weak transcription Enhancers ZNF genes & repeats | TF binding regionCpG islandlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv459041 | chr2:115800609-115834653 | Weak transcription ZNF genes & repeats Enhancers | TF binding regionCpG islandlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv582732 | chr2:115800609-115834653 | ZNF genes & repeats Weak transcription Enhancers | TF binding regionCpG islandlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
