Variant report
| Variant | rs5997837 |
|---|---|
| Chromosome Location | chr22:31399953-31399954 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr22:31365415..31366956-chr22:31399078..31401450,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000253352 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs1017066 | 0.82[EUR][1000 genomes] |
| rs1034845 | 0.82[EUR][1000 genomes] |
| rs11089481 | 0.85[EUR][1000 genomes] |
| rs11703597 | 0.87[EUR][1000 genomes] |
| rs11705565 | 0.84[EUR][1000 genomes] |
| rs12166294 | 0.86[EUR][1000 genomes] |
| rs12167144 | 0.81[EUR][1000 genomes] |
| rs12168307 | 0.86[EUR][1000 genomes] |
| rs2240176 | 0.90[EUR][1000 genomes] |
| rs2240181 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs3827330 | 0.91[EUR][1000 genomes] |
| rs4820921 | 0.91[EUR][1000 genomes] |
| rs5753373 | 0.85[EUR][1000 genomes] |
| rs5753377 | 0.85[EUR][1000 genomes] |
| rs5753378 | 0.87[EUR][1000 genomes] |
| rs5753379 | 0.87[EUR][1000 genomes] |
| rs5997802 | 0.88[EUR][1000 genomes] |
| rs5997842 | 0.85[EUR][1000 genomes] |
| rs7284474 | 0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7288964 | 1.00[AFR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs7291471 | 0.91[EUR][1000 genomes] |
| rs8139350 | 0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs8140448 | 0.89[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv9896 | chr22:31369204-31513933 | Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 35 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:6)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs5997837 | MORC2-AS1 | cis | Esophagus Muscularis | GTEx |
| rs5997837 | MORC2-AS1 | cis | Thyroid | GTEx |
| rs5997837 | MORC2-AS1 | cis | Skin Sun Exposed Lower leg | GTEx |
| rs5997837 | MORC2-AS1 | cis | Nerve Tibial | GTEx |
| rs5997837 | TUG1 | Cis_1M | lymphoblastoid | RTeQTL |
| rs5997837 | MORC2-AS1 | cis | Whole Blood | GTEx |
Chromatin state (count:0 , 50 per page) page:
| No data |
