Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:31380811..31382540-chr22:31388088..31390442,2	K562	blood:
2	chr22:31389318..31390927-chr22:31410868..31412701,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1017066	0.81[EUR][1000 genomes]
rs1034845	0.81[EUR][1000 genomes]
rs11089481	0.95[CEU][hapmap];0.86[EUR][1000 genomes]
rs11703597	0.87[EUR][1000 genomes]
rs11705565	0.85[EUR][1000 genomes]
rs12166294	0.87[EUR][1000 genomes]
rs12167141	0.85[CEU][hapmap]
rs12167144	0.82[EUR][1000 genomes]
rs12168307	0.87[EUR][1000 genomes]
rs2240176	0.95[CEU][hapmap];0.90[EUR][1000 genomes]
rs2240181	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3827330	0.95[CEU][hapmap];0.91[EUR][1000 genomes]
rs4820921	0.95[CEU][hapmap];0.91[EUR][1000 genomes]
rs5753373	0.95[CEU][hapmap];0.86[EUR][1000 genomes]
rs5753377	0.85[EUR][1000 genomes]
rs5753378	0.88[EUR][1000 genomes]
rs5753379	0.88[EUR][1000 genomes]
rs5997802	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs5997837	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs5997842	0.85[EUR][1000 genomes]
rs7288964	0.81[EUR][1000 genomes]
rs7291471	0.91[EUR][1000 genomes]
rs8139350	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8139971	0.81[AMR][1000 genomes]
rs8140448	1.00[CEU][hapmap];0.88[JPT][hapmap];0.90[EUR][1000 genomes]
rs9621153	0.84[CEU][hapmap];0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9896	chr22:31369204-31513933	Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs7284474	MORC2-AS1	cis	Whole Blood	GTEx
rs7284474	MORC2-AS1	cis	Skin Sun Exposed Lower leg	GTEx
rs7284474	MORC2-AS1	cis	Nerve Tibial	GTEx
rs7284474	MORC2-AS1	cis	Artery Tibial	GTEx
rs7284474	MORC2-AS1	cis	Esophagus Muscularis	GTEx
rs7284474	MORC2-AS1	cis	Thyroid	GTEx
rs7284474	TUG1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31387600-31390800	Weak transcription	K562	blood
2	chr22:31389200-31390800	Weak transcription	Gastric	stomach

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