Variant report

Variant	rs5998155
Chromosome Location	chr22:32273159-32273160
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	22:32264718-32278135..22:32846948-32860159	GM12878	blood:
2	chr22:32271601..32273681-chr22:32358946..32361884,2	K562	blood:
3	22:31936958-31958600..22:32264718-32278135	Hela-S3	cervix:
4	22:32264718-32278135..22:32284948-32287956	Hela-S3	cervix:
5	22:32150875-32154575..22:32264718-32278135	GM12878	blood:
6	chr22:32264603..32274220-chr22:32339477..32348693,21	K562	blood:

Variant related genes	Relation type
ENSG00000227519	Chromatin interaction
ENSG00000128254	Chromatin interaction
ENSG00000128245	Chromatin interaction
ENSG00000184459	Chromatin interaction
ENSG00000214093	Chromatin interaction
ENSG00000242251	Chromatin interaction
ENSG00000227813	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11089531	0.81[ASN][1000 genomes]
rs12159545	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs16989540	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16989600	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2051583	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5994436	0.81[ASN][1000 genomes]
rs5998144	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998150	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998161	0.81[ASN][1000 genomes]
rs62238893	0.81[AMR][1000 genomes]
rs62238934	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7289702	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7291742	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73884225	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32242400-32313400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr22:32243200-32294200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr22:32244400-32305400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr22:32244600-32303400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr22:32247000-32282400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr22:32247600-32307400	Weak transcription	Hela-S3	cervix
7	chr22:32249200-32289200	Weak transcription	HepG2	liver
8	chr22:32253400-32275600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr22:32254200-32293800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr22:32255800-32282600	Strong transcription	Fetal Muscle Leg	muscle
11	chr22:32256800-32293400	Weak transcription	Fetal Brain Male	brain
12	chr22:32261400-32273200	Strong transcription	Primary T cells from cord blood	blood
13	chr22:32261400-32276600	Strong transcription	Fetal Intestine Large	intestine
14	chr22:32261400-32278600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr22:32261600-32296200	Strong transcription	Liver	Liver
16	chr22:32261800-32273200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr22:32262000-32289600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr22:32262200-32275400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr22:32264200-32282400	Strong transcription	Fetal Muscle Trunk	muscle
20	chr22:32264200-32287400	Strong transcription	Fetal Stomach	stomach
21	chr22:32264200-32296000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr22:32264400-32276600	Strong transcription	Fetal Intestine Small	intestine
23	chr22:32264400-32287200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr22:32264600-32273200	Strong transcription	Ovary	ovary
25	chr22:32265000-32287000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr22:32265000-32287200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr22:32265200-32273200	Strong transcription	Primary T cells fromperipheralblood	blood
28	chr22:32265400-32293600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr22:32265800-32273200	Strong transcription	Placenta	Placenta
30	chr22:32265800-32276200	Strong transcription	Left Ventricle	heart
31	chr22:32266200-32273200	Strong transcription	Fetal Thymus	thymus
32	chr22:32266600-32273200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr22:32266800-32273200	Strong transcription	Lung	lung
34	chr22:32267000-32297400	Weak transcription	Fetal Heart	heart
35	chr22:32267200-32287200	Weak transcription	Fetal Kidney	kidney
36	chr22:32267600-32287200	Weak transcription	NH-A	brain
37	chr22:32267800-32287400	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr22:32268000-32273200	Strong transcription	Primary B cells from peripheral blood	blood
39	chr22:32268000-32287200	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr22:32268000-32308000	Weak transcription	A549	lung
41	chr22:32268400-32276000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr22:32268400-32282600	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr22:32269400-32273200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr22:32269400-32275400	Weak transcription	Brain Hippocampus Middle	brain
45	chr22:32269400-32275400	Weak transcription	Colonic Mucosa	Colon
46	chr22:32270200-32273200	Strong transcription	Primary monocytes fromperipheralblood	blood
47	chr22:32270200-32273200	Strong transcription	Primary neutrophils fromperipheralblood	blood
48	chr22:32270400-32275600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr22:32270600-32275200	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr22:32271000-32275200	Weak transcription	Brain Angular Gyrus	brain

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