Variant report

Variant	rs73884225
Chromosome Location	chr22:32272730-32272731
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	22:32264718-32278135..22:32846948-32860159	GM12878	blood:
2	chr22:32271601..32273681-chr22:32358946..32361884,2	K562	blood:
3	22:31936958-31958600..22:32264718-32278135	Hela-S3	cervix:
4	chr22:32271099..32272918-chr22:32275231..32277361,2	K562	blood:
5	22:32264718-32278135..22:32284948-32287956	Hela-S3	cervix:
6	chr22:32267894..32269961-chr22:32270428..32273149,2	K562	blood:
7	22:32150875-32154575..22:32264718-32278135	GM12878	blood:
8	chr22:32264603..32274220-chr22:32339477..32348693,21	K562	blood:

Variant related genes	Relation type
ENSG00000184459	Chromatin interaction
ENSG00000214093	Chromatin interaction
ENSG00000242251	Chromatin interaction
ENSG00000227813	Chromatin interaction
ENSG00000128254	Chromatin interaction
ENSG00000128245	Chromatin interaction
ENSG00000227519	Chromatin interaction
ENSG00000100150	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11089531	0.81[ASN][1000 genomes]
rs11703818	0.82[AFR][1000 genomes]
rs12159545	0.92[ASN][1000 genomes]
rs16989540	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16989600	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16989609	0.81[AFR][1000 genomes]
rs2051583	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28542543	0.85[AFR][1000 genomes]
rs3213524	0.81[AFR][1000 genomes]
rs3788436	0.81[AFR][1000 genomes]
rs5994436	0.81[ASN][1000 genomes]
rs5998144	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998150	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998155	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998157	0.81[AFR][1000 genomes]
rs5998160	0.81[AFR][1000 genomes]
rs5998161	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs62238934	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7289702	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7291742	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32242400-32313400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr22:32243200-32294200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr22:32244400-32305400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr22:32244600-32303400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr22:32247000-32282400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr22:32247600-32307400	Weak transcription	Hela-S3	cervix
7	chr22:32249200-32289200	Weak transcription	HepG2	liver
8	chr22:32253400-32275600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr22:32254200-32293800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr22:32255400-32273000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
11	chr22:32255800-32282600	Strong transcription	Fetal Muscle Leg	muscle
12	chr22:32256800-32293400	Weak transcription	Fetal Brain Male	brain
13	chr22:32261400-32273200	Strong transcription	Primary T cells from cord blood	blood
14	chr22:32261400-32276600	Strong transcription	Fetal Intestine Large	intestine
15	chr22:32261400-32278600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr22:32261600-32296200	Strong transcription	Liver	Liver
17	chr22:32261800-32273200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr22:32262000-32289600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr22:32262200-32275400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr22:32264200-32282400	Strong transcription	Fetal Muscle Trunk	muscle
21	chr22:32264200-32287400	Strong transcription	Fetal Stomach	stomach
22	chr22:32264200-32296000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr22:32264400-32276600	Strong transcription	Fetal Intestine Small	intestine
24	chr22:32264400-32287200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr22:32264600-32272800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr22:32264600-32273200	Strong transcription	Ovary	ovary
27	chr22:32264800-32272800	Strong transcription	Dnd41	blood
28	chr22:32264800-32273000	Strong transcription	Duodenum Smooth Muscle	Duodenum
29	chr22:32265000-32287000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr22:32265000-32287200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr22:32265200-32273200	Strong transcription	Primary T cells fromperipheralblood	blood
32	chr22:32265400-32293600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr22:32265800-32273000	Strong transcription	Fetal Brain Female	brain
34	chr22:32265800-32273200	Strong transcription	Placenta	Placenta
35	chr22:32265800-32276200	Strong transcription	Left Ventricle	heart
36	chr22:32266200-32272800	Strong transcription	Primary T helper cells PMA-I stimulated	--
37	chr22:32266200-32273200	Strong transcription	Fetal Thymus	thymus
38	chr22:32266600-32273000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr22:32266600-32273200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr22:32266800-32273200	Strong transcription	Lung	lung
41	chr22:32267000-32297400	Weak transcription	Fetal Heart	heart
42	chr22:32267200-32287200	Weak transcription	Fetal Kidney	kidney
43	chr22:32267600-32287200	Weak transcription	NH-A	brain
44	chr22:32267800-32273000	Strong transcription	GM12878-XiMat	blood
45	chr22:32267800-32287400	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr22:32268000-32273200	Strong transcription	Primary B cells from peripheral blood	blood
47	chr22:32268000-32287200	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr22:32268000-32308000	Weak transcription	A549	lung
49	chr22:32268400-32276000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr22:32268400-32282600	Strong transcription	Monocytes-CD14+_RO01746	blood

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