Variant report

Variant	rs28542543
Chromosome Location	chr22:32269699-32269700
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	22:32264718-32278135..22:32846948-32860159	GM12878	blood:
2	chr22:32263494..32270321-chr22:32339054..32343535,9	K562	blood:
3	22:31936958-31958600..22:32264718-32278135	Hela-S3	cervix:
4	chr22:32265561..32271092-chr22:32337255..32342585,8	MCF-7	breast:
5	22:32264718-32278135..22:32284948-32287956	Hela-S3	cervix:
6	chr22:32267945..32270075-chr22:32339613..32341959,2	MCF-7	breast:
7	22:32150875-32154575..22:32264718-32278135	GM12878	blood:
8	chr22:32264603..32274220-chr22:32339477..32348693,21	K562	blood:

Variant related genes	Relation type
ENSG00000128245	Chromatin interaction
ENSG00000184459	Chromatin interaction
ENSG00000227813	Chromatin interaction
ENSG00000128254	Chromatin interaction
ENSG00000214093	Chromatin interaction
ENSG00000242251	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1034419	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11703818	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16989609	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2051583	0.88[AFR][1000 genomes]
rs3213524	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3788436	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5994444	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5994446	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs5998139	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs5998151	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998153	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998157	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs5998160	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998161	0.85[AFR][1000 genomes]
rs5998170	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs5998171	0.84[AMR][1000 genomes]
rs5998172	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73884225	0.85[AFR][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32242400-32313400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr22:32243200-32294200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr22:32244400-32305400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr22:32244600-32270200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr22:32244600-32303400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr22:32247000-32282400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr22:32247600-32307400	Weak transcription	Hela-S3	cervix
8	chr22:32247800-32270400	Weak transcription	Psoas Muscle	Psoas
9	chr22:32249200-32289200	Weak transcription	HepG2	liver
10	chr22:32253400-32275600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr22:32254200-32293800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr22:32254400-32270800	Weak transcription	Small Intestine	intestine
13	chr22:32255400-32273000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr22:32255800-32282600	Strong transcription	Fetal Muscle Leg	muscle
15	chr22:32256800-32293400	Weak transcription	Fetal Brain Male	brain
16	chr22:32257800-32272000	Weak transcription	NHLF	lung
17	chr22:32259400-32270600	Weak transcription	HSMM	muscle
18	chr22:32261400-32273200	Strong transcription	Primary T cells from cord blood	blood
19	chr22:32261400-32276600	Strong transcription	Fetal Intestine Large	intestine
20	chr22:32261400-32278600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr22:32261600-32271600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr22:32261600-32296200	Strong transcription	Liver	Liver
23	chr22:32261800-32273200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr22:32262000-32289600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr22:32262200-32275400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr22:32263600-32272600	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr22:32263600-32272600	Strong transcription	Sigmoid Colon	Sigmoid Colon
28	chr22:32263800-32270200	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr22:32263800-32270200	Weak transcription	Stomach Mucosa	stomach
30	chr22:32263800-32271000	Strong transcription	Thymus	Thymus
31	chr22:32264200-32282400	Strong transcription	Fetal Muscle Trunk	muscle
32	chr22:32264200-32287400	Strong transcription	Fetal Stomach	stomach
33	chr22:32264200-32296000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr22:32264400-32270000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr22:32264400-32272600	Strong transcription	Stomach Smooth Muscle	stomach
36	chr22:32264400-32276600	Strong transcription	Fetal Intestine Small	intestine
37	chr22:32264400-32287200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr22:32264600-32272800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr22:32264600-32273200	Strong transcription	Ovary	ovary
40	chr22:32264800-32271400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr22:32264800-32272800	Strong transcription	Dnd41	blood
42	chr22:32264800-32273000	Strong transcription	Duodenum Smooth Muscle	Duodenum
43	chr22:32265000-32271200	Strong transcription	Aorta	Aorta
44	chr22:32265000-32271400	Strong transcription	HSMMtube	muscle
45	chr22:32265000-32287000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr22:32265000-32287200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr22:32265200-32273200	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr22:32265400-32293600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr22:32265600-32271400	Strong transcription	Duodenum Mucosa	Duodenum
50	chr22:32265800-32273000	Strong transcription	Fetal Brain Female	brain

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