Variant report

Variant	rs5998151
Chromosome Location	chr22:32259855-32259856
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	22:32255158-32261719..22:32292186-32294405	GM12878	blood:
2	22:32255158-32261719..22:33339333-33353583	GM12878	blood:
3	22:31864703-31891033..22:32255158-32261719	K562	blood:
4	22:32162110-32166713..22:32255158-32261719	GM12878	blood:
5	22:31803954-31807204..22:32255158-32261719	GM12878	blood:
6	22:32053085-32061138..22:32255158-32261719	GM12878	blood:
7	22:32170492-32188129..22:32255158-32261719	GM12878	blood:
8	22:32255158-32261719..22:32802848-32805157	GM12878	blood:
9	22:31836635-31847259..22:32255158-32261719	K562	blood:
10	22:32012966-32043914..22:32255158-32261719	GM12878	blood:
11	22:32255158-32261719..22:32338420-32342898	H1-hESC	embryonic stem cell:	embryo
12	22:32255158-32261719..22:32342898-32343477	GM12878	blood:
13	22:32255158-32261719..22:32868055-32872511	GM12878	blood:
14	22:32102727-32109893..22:32255158-32261719	GM12878	blood:
15	22:32255158-32261719..22:32740683-32750950	K562	blood:

No data

Variant related genes	Relation type
ENSG00000184708	Chromatin interaction
ENSG00000128276	Chromatin interaction
ENSG00000185666	Chromatin interaction
ENSG00000198089	Chromatin interaction
ENSG00000100225	Chromatin interaction
ENSG00000183530	Chromatin interaction
ENSG00000241878	Chromatin interaction
ENSG00000128245	Chromatin interaction
ENSG00000128254	Chromatin interaction
ENSG00000100150	Chromatin interaction
ENSG00000100220	Chromatin interaction
ENSG00000199248	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1034419	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11703818	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16989609	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28542543	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3213524	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3788436	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5994444	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5994446	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs5998139	0.87[AMR][1000 genomes]
rs5998153	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs5998157	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs5998160	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998170	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs5998171	0.88[AMR][1000 genomes]
rs5998172	0.91[AMR][1000 genomes]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32192400-32266600	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr22:32226200-32263200	Weak transcription	Stomach Mucosa	stomach
3	chr22:32231400-32260400	Strong transcription	Liver	Liver
4	chr22:32241400-32263600	Weak transcription	HSMMtube	muscle
5	chr22:32242400-32313400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr22:32242800-32266400	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr22:32243000-32263000	Strong transcription	Primary B cells from peripheral blood	blood
8	chr22:32243200-32294200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr22:32243600-32266200	Weak transcription	A549	lung
10	chr22:32244400-32266200	Weak transcription	HUVEC	blood vessel
11	chr22:32244400-32305400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr22:32244600-32263000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr22:32244600-32264200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr22:32244600-32266800	Weak transcription	Colon Smooth Muscle	Colon
15	chr22:32244600-32270200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr22:32244600-32303400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr22:32244800-32266600	Weak transcription	Osteobl	bone
18	chr22:32247000-32282400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr22:32247600-32307400	Weak transcription	Hela-S3	cervix
20	chr22:32247800-32264800	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr22:32247800-32270400	Weak transcription	Psoas Muscle	Psoas
22	chr22:32249200-32289200	Weak transcription	HepG2	liver
23	chr22:32250400-32261800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr22:32250800-32266200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr22:32252400-32266600	Weak transcription	Rectal Smooth Muscle	rectum
26	chr22:32253400-32261800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr22:32253400-32275600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr22:32253600-32262800	Weak transcription	K562	blood
29	chr22:32253800-32261600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr22:32253800-32262800	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr22:32253800-32263000	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr22:32253800-32263000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr22:32253800-32263400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr22:32253800-32266600	Weak transcription	Fetal Kidney	kidney
35	chr22:32253800-32268800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr22:32254200-32263000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr22:32254200-32266600	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr22:32254200-32293800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr22:32254400-32264600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr22:32254400-32265000	Weak transcription	Aorta	Aorta
41	chr22:32254400-32266200	Weak transcription	Fetal Thymus	thymus
42	chr22:32254400-32267400	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr22:32254400-32270800	Weak transcription	Small Intestine	intestine
44	chr22:32255400-32273000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr22:32255600-32262800	Strong transcription	Fetal Intestine Small	intestine
46	chr22:32255600-32262800	Strong transcription	Fetal Stomach	stomach
47	chr22:32255800-32282600	Strong transcription	Fetal Muscle Leg	muscle
48	chr22:32256200-32266600	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr22:32256400-32264600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr22:32256400-32266600	Weak transcription	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links