Variant report

Variant	rs5998160
Chromosome Location	chr22:32282716-32282717
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:32282411..32284526-chr22:32298049..32300307,2	K562	blood:
2	22:32012966-32043914..22:32278135-32284948	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000241878	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1034419	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11703818	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16989609	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2051583	0.83[AFR][1000 genomes]
rs28542543	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3213524	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3788436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5994444	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5994446	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs5998139	0.82[AMR][1000 genomes]
rs5998151	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998153	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998157	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs5998161	0.86[AFR][1000 genomes]
rs5998170	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs5998171	0.86[AMR][1000 genomes]
rs5998172	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs60480657	0.81[AFR][1000 genomes]
rs73884225	0.81[AFR][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32242400-32313400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr22:32243200-32294200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr22:32244400-32305400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr22:32244600-32303400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr22:32247600-32307400	Weak transcription	Hela-S3	cervix
6	chr22:32249200-32289200	Weak transcription	HepG2	liver
7	chr22:32254200-32293800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr22:32256800-32293400	Weak transcription	Fetal Brain Male	brain
9	chr22:32261600-32296200	Strong transcription	Liver	Liver
10	chr22:32262000-32289600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr22:32264200-32287400	Strong transcription	Fetal Stomach	stomach
12	chr22:32264200-32296000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr22:32264400-32287200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr22:32265000-32287000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr22:32265000-32287200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr22:32265400-32293600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr22:32267000-32297400	Weak transcription	Fetal Heart	heart
18	chr22:32267200-32287200	Weak transcription	Fetal Kidney	kidney
19	chr22:32267600-32287200	Weak transcription	NH-A	brain
20	chr22:32267800-32287400	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr22:32268000-32287200	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr22:32268000-32308000	Weak transcription	A549	lung
23	chr22:32271200-32287400	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr22:32271200-32291600	Weak transcription	Small Intestine	intestine
25	chr22:32271200-32303400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr22:32271400-32298400	Weak transcription	HSMMtube	muscle
27	chr22:32271600-32297400	Weak transcription	HSMM	muscle
28	chr22:32272400-32285000	Weak transcription	Osteobl	bone
29	chr22:32272600-32293600	Weak transcription	HUVEC	blood vessel
30	chr22:32272600-32298200	Weak transcription	NHLF	lung
31	chr22:32272800-32287200	Weak transcription	NHDF-Ad	bronchial
32	chr22:32273000-32287000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr22:32273000-32304000	Weak transcription	HMEC	breast
34	chr22:32273200-32283400	Weak transcription	Fetal Thymus	thymus
35	chr22:32274000-32295000	Strong transcription	Primary T helper cells fromperipheralblood	blood
36	chr22:32274000-32306600	Strong transcription	Primary B cells from peripheral blood	blood
37	chr22:32274400-32306600	Strong transcription	Primary monocytes fromperipheralblood	blood
38	chr22:32275000-32296200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr22:32275200-32282800	Strong transcription	Stomach Smooth Muscle	stomach
40	chr22:32275200-32296000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
41	chr22:32275600-32293200	Weak transcription	Psoas Muscle	Psoas
42	chr22:32275600-32295800	Strong transcription	Primary T cells from cord blood	blood
43	chr22:32276000-32287200	Weak transcription	Brain Anterior Caudate	brain
44	chr22:32276000-32287400	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr22:32276000-32289400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr22:32276000-32315200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr22:32276200-32283400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr22:32276200-32287400	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr22:32276200-32287400	Weak transcription	Brain Substantia Nigra	brain
50	chr22:32276200-32289400	Weak transcription	Esophagus	oesophagus

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