Variant report

Variant	rs59983698
Chromosome Location	chr18:9124362-9124363
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:9123369..9127442-chr18:9129820..9133797,5	MCF-7	breast:
2	chr18:9120335..9122312-chr18:9122344..9126216,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000266053	Chromatin interaction

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs1046483	0.80[EUR][1000 genomes]
rs10502391	0.80[EUR][1000 genomes]
rs12326829	0.80[EUR][1000 genomes]
rs1443597	0.80[EUR][1000 genomes]
rs16954886	0.80[EUR][1000 genomes]
rs16954905	0.80[EUR][1000 genomes]
rs17413344	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17497377	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs17498752	0.80[EUR][1000 genomes]
rs17498969	0.80[EUR][1000 genomes]
rs17499116	0.80[EUR][1000 genomes]
rs1899668	0.80[EUR][1000 genomes]
rs2120316	0.80[EUR][1000 genomes]
rs2377962	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28520663	0.80[EUR][1000 genomes]
rs28578690	0.81[ASN][1000 genomes]
rs28619483	0.80[EUR][1000 genomes]
rs2864515	0.80[EUR][1000 genomes]
rs3213925	0.80[EUR][1000 genomes]
rs3744822	0.80[EUR][1000 genomes]
rs3744823	0.80[EUR][1000 genomes]
rs4356535	0.80[EUR][1000 genomes]
rs4449017	0.80[EUR][1000 genomes]
rs4490062	0.80[EUR][1000 genomes]
rs5011606	0.80[EUR][1000 genomes]
rs56996721	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs57716132	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58350342	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs59018067	0.80[EUR][1000 genomes]
rs59616258	0.80[EUR][1000 genomes]
rs59633812	0.80[EUR][1000 genomes]
rs60119987	0.80[EUR][1000 genomes]
rs60143204	0.84[EUR][1000 genomes]
rs60354371	0.80[EUR][1000 genomes]
rs7229105	0.84[EUR][1000 genomes]
rs7235358	0.80[EUR][1000 genomes]
rs72935229	1.00[AFR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72935233	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72935236	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72935248	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72935249	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72935251	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72935253	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72935258	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72935260	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72935263	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72935265	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72935266	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72935267	0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72935274	0.87[EUR][1000 genomes]
rs72937244	0.84[EUR][1000 genomes]
rs72937245	0.84[EUR][1000 genomes]
rs72937248	0.84[EUR][1000 genomes]
rs72937250	0.84[EUR][1000 genomes]
rs72937257	0.81[EUR][1000 genomes]
rs72937258	0.80[EUR][1000 genomes]
rs72937259	0.80[EUR][1000 genomes]
rs72937263	0.80[EUR][1000 genomes]
rs72937267	0.89[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs72937270	0.80[EUR][1000 genomes]
rs72937287	0.80[EUR][1000 genomes]
rs72937291	0.80[EUR][1000 genomes]
rs72937297	0.80[EUR][1000 genomes]
rs72937301	0.80[EUR][1000 genomes]
rs72939207	0.80[EUR][1000 genomes]
rs72939211	0.80[EUR][1000 genomes]
rs72939216	0.84[AFR][1000 genomes]
rs72939219	0.80[EUR][1000 genomes]
rs72939220	0.80[EUR][1000 genomes]
rs72939221	0.80[EUR][1000 genomes]
rs72939224	0.80[EUR][1000 genomes]
rs72939227	0.80[EUR][1000 genomes]
rs72939230	0.80[EUR][1000 genomes]
rs72939231	0.80[EUR][1000 genomes]
rs72939232	0.80[EUR][1000 genomes]
rs72939235	0.80[EUR][1000 genomes]
rs72939239	0.80[EUR][1000 genomes]
rs7506375	0.80[EUR][1000 genomes]
rs7506561	0.90[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs8094979	0.87[EUR][1000 genomes]
rs8098544	0.80[EUR][1000 genomes]
rs9652921	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs9675513	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9748485	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064883	chr18:8709670-9133224	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv916373	chr18:9026803-9592201	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv431971	chr18:9081185-9326852	Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv1056258	chr18:9094498-9181498	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv909364	chr18:9114096-9186684	Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv543641	chr18:9120450-9181498	Genic enhancers Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	esv3497732	chr18:9121988-9124378	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	esv3497733	chr18:9121988-9124378	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:9104400-9130000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr18:9107000-9135200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr18:9107400-9135400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr18:9107800-9134600	Weak transcription	Fetal Brain Male	brain
5	chr18:9108200-9127200	Weak transcription	Fetal Brain Female	brain
6	chr18:9111200-9125400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr18:9111600-9126800	Weak transcription	Colonic Mucosa	Colon
8	chr18:9114000-9127400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr18:9114000-9130800	Weak transcription	Ovary	ovary
10	chr18:9115400-9134600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr18:9115800-9134800	Strong transcription	Dnd41	blood
12	chr18:9116800-9135200	Strong transcription	Fetal Thymus	thymus
13	chr18:9117200-9134800	Weak transcription	Brain Germinal Matrix	brain
14	chr18:9117400-9125800	Weak transcription	Right Atrium	heart
15	chr18:9117400-9132000	Strong transcription	Fetal Intestine Large	intestine
16	chr18:9117400-9135200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr18:9117400-9135600	Weak transcription	Esophagus	oesophagus
18	chr18:9117400-9135800	Weak transcription	Gastric	stomach
19	chr18:9117600-9127400	Weak transcription	Spleen	Spleen
20	chr18:9117600-9134800	Strong transcription	HUES6 Cell Line	embryonic stem cell
21	chr18:9117600-9135200	Weak transcription	Psoas Muscle	Psoas
22	chr18:9117600-9135800	Weak transcription	Pancreas	Pancrea
23	chr18:9117800-9127200	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr18:9117800-9128800	Weak transcription	Lung	lung
25	chr18:9117800-9132600	Weak transcription	Aorta	Aorta
26	chr18:9117800-9135000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr18:9117800-9135600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr18:9117800-9135800	Weak transcription	Small Intestine	intestine
29	chr18:9118200-9124400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
30	chr18:9118200-9134400	Strong transcription	HUES64 Cell Line	embryonic stem cell
31	chr18:9118200-9135000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
32	chr18:9118400-9134400	Strong transcription	HUES48 Cell Line	embryonic stem cell
33	chr18:9118600-9134600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr18:9118600-9135000	Strong transcription	H1 Cell Line	embryonic stem cell
35	chr18:9118800-9134400	Strong transcription	K562	blood
36	chr18:9118800-9135600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr18:9118800-9135600	Weak transcription	Right Ventricle	heart
38	chr18:9119000-9132600	Strong transcription	Rectal Mucosa Donor 31	rectum
39	chr18:9119200-9125200	Weak transcription	Fetal Heart	heart
40	chr18:9119200-9131200	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr18:9119200-9134400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr18:9119400-9135200	Weak transcription	Stomach Mucosa	stomach
43	chr18:9119600-9132000	Strong transcription	Primary neutrophils fromperipheralblood	blood
44	chr18:9119800-9124400	Strong transcription	HSMM	muscle
45	chr18:9119800-9126200	Weak transcription	Brain Cingulate Gyrus	brain
46	chr18:9119800-9135000	Strong transcription	Monocytes-CD14+_RO01746	blood
47	chr18:9119800-9135400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr18:9120000-9134800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr18:9120200-9127200	Weak transcription	Brain Anterior Caudate	brain
50	chr18:9120600-9125400	Weak transcription	Colon Smooth Muscle	Colon

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