Variant report

Variant rs5998599
Chromosome Location chr22:21941981-21941982
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:126 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr22:21924400-21947400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr22:21924800-21942000 Weak transcription Fetal Brain Male brain
3 chr22:21925600-21946800 Weak transcription HUES64 Cell Line embryonic stem cell
4 chr22:21925800-21946800 Weak transcription HUES48 Cell Line embryonic stem cell
5 chr22:21927800-21942000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
6 chr22:21928000-21942400 Weak transcription HUES6 Cell Line embryonic stem cell
7 chr22:21928200-21943600 Weak transcription H1 Cell Line embryonic stem cell
8 chr22:21928800-21945600 Weak transcription Brain Germinal Matrix brain
9 chr22:21929000-21942000 Weak transcription Rectal Smooth Muscle rectum
10 chr22:21929000-21943800 Weak transcription Hela-S3 cervix
11 chr22:21929000-21945000 Weak transcription HMEC breast
12 chr22:21929000-21947000 Weak transcription HUVEC blood vessel
13 chr22:21929200-21942000 Weak transcription Muscle Satellite Cultured Cells --
14 chr22:21932000-21945200 Weak transcription A549 lung
15 chr22:21933000-21946800 Weak transcription Placenta Amnion Placenta Amnion
16 chr22:21933200-21945400 Weak transcription Colonic Mucosa Colon
17 chr22:21933400-21948000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
18 chr22:21933800-21946200 Weak transcription iPS-20b Cell Line embryonic stem cell
19 chr22:21934400-21942000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
20 chr22:21934600-21942000 Weak transcription Rectal Mucosa Donor 29 rectum
21 chr22:21934600-21942200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
22 chr22:21934600-21944800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
23 chr22:21934600-21945200 Weak transcription Fetal Intestine Large intestine
24 chr22:21934600-21945400 Weak transcription Rectal Mucosa Donor 31 rectum
25 chr22:21934800-21942000 Weak transcription Small Intestine intestine
26 chr22:21936000-21948400 Weak transcription ES-I3 Cell Line embryonic stem cell
27 chr22:21937200-21943800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
28 chr22:21937200-21944400 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
29 chr22:21937400-21942000 Strong transcription Fetal Stomach stomach
30 chr22:21937400-21945200 Weak transcription Aorta Aorta
31 chr22:21937400-21946000 Weak transcription Cortex derived primary cultured neurospheres brain
32 chr22:21937600-21942000 Weak transcription Liver Liver
33 chr22:21937600-21947400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
34 chr22:21937800-21942000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
35 chr22:21937800-21942000 Weak transcription Skeletal Muscle Male skeletal muscle
36 chr22:21937800-21945000 Weak transcription Fetal Lung lung
37 chr22:21937800-21965400 Weak transcription Pancreatic Islets Pancreatic Islet
38 chr22:21938000-21942000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
39 chr22:21938000-21942000 Weak transcription Breast Myoepithelial Primary Cells Breast
40 chr22:21938000-21942000 Weak transcription Right Ventricle heart
41 chr22:21938000-21942000 Weak transcription Stomach Smooth Muscle stomach
42 chr22:21938000-21942200 Weak transcription Esophagus oesophagus
43 chr22:21938000-21947200 Weak transcription Fetal Kidney kidney
44 chr22:21938200-21942000 Weak transcription Placenta Placenta
45 chr22:21938200-21942000 Weak transcription NHDF-Ad bronchial
46 chr22:21938200-21945000 Weak transcription Fetal Heart heart
47 chr22:21939000-21954000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
48 chr22:21939200-21942800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
49 chr22:21939400-21943800 Enhancers Primary T helper cells PMA-I stimulated --
50 chr22:21939600-21983200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived

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