Variant report

Variant rs5998619
Chromosome Location chr22:21945851-21945852
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:126 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr22:21924400-21947400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr22:21925600-21946800 Weak transcription HUES64 Cell Line embryonic stem cell
3 chr22:21925800-21946800 Weak transcription HUES48 Cell Line embryonic stem cell
4 chr22:21929000-21947000 Weak transcription HUVEC blood vessel
5 chr22:21933000-21946800 Weak transcription Placenta Amnion Placenta Amnion
6 chr22:21933400-21948000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
7 chr22:21933800-21946200 Weak transcription iPS-20b Cell Line embryonic stem cell
8 chr22:21936000-21948400 Weak transcription ES-I3 Cell Line embryonic stem cell
9 chr22:21937400-21946000 Weak transcription Cortex derived primary cultured neurospheres brain
10 chr22:21937600-21947400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
11 chr22:21937800-21965400 Weak transcription Pancreatic Islets Pancreatic Islet
12 chr22:21938000-21947200 Weak transcription Fetal Kidney kidney
13 chr22:21939000-21954000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
14 chr22:21939600-21983200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
15 chr22:21941200-21946000 Enhancers Primary B cells from cord blood blood
16 chr22:21941800-21946600 Enhancers Primary neutrophils fromperipheralblood blood
17 chr22:21942200-21947200 Weak transcription H9 Cell Line embryonic stem cell
18 chr22:21942400-21947800 Weak transcription Fetal Brain Male brain
19 chr22:21942600-21946800 Weak transcription Rectal Mucosa Donor 29 rectum
20 chr22:21942600-21947000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
21 chr22:21942600-21960800 Weak transcription Small Intestine intestine
22 chr22:21942800-21946800 Weak transcription iPS-18 Cell Line embryonic stem cell
23 chr22:21942800-21947400 Weak transcription NH-A brain
24 chr22:21943000-21946800 Weak transcription Primary monocytes fromperipheralblood blood
25 chr22:21943400-21963600 Strong transcription Fetal Intestine Small intestine
26 chr22:21943600-21946400 Genic enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
27 chr22:21943600-21947400 Enhancers Left Ventricle heart
28 chr22:21943800-21946200 Enhancers Ovary ovary
29 chr22:21943800-21946400 Enhancers Primary T killer naive cells fromperipheralblood blood
30 chr22:21943800-21946600 Enhancers Adipose Nuclei Adipose
31 chr22:21943800-21946800 Enhancers Brain Hippocampus Middle brain
32 chr22:21943800-21947000 Enhancers Pancreas Pancrea
33 chr22:21943800-21947000 Enhancers Skeletal Muscle Male skeletal muscle
34 chr22:21943800-21947200 Enhancers Skeletal Muscle Female skeletal muscle
35 chr22:21943800-21948800 Genic enhancers Primary T helper cells PMA-I stimulated --
36 chr22:21943800-21952000 Strong transcription HepG2 liver
37 chr22:21943800-21954200 Strong transcription Dnd41 blood
38 chr22:21944000-21946200 Enhancers Primary T helper naive cells from peripheral blood blood
39 chr22:21944000-21946600 Enhancers Stomach Smooth Muscle stomach
40 chr22:21944000-21947200 Weak transcription H1 Cell Line embryonic stem cell
41 chr22:21944000-21951200 Strong transcription Monocytes-CD14+_RO01746 blood
42 chr22:21944200-21946000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
43 chr22:21944200-21946400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
44 chr22:21944200-21946800 Enhancers Breast Myoepithelial Primary Cells Breast
45 chr22:21944200-21948600 Weak transcription Hela-S3 cervix
46 chr22:21944400-21946200 Enhancers Primary T helper cells fromperipheralblood blood
47 chr22:21944400-21946400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
48 chr22:21944400-21946600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
49 chr22:21944400-21946800 Enhancers Primary T cells fromperipheralblood blood
50 chr22:21944400-21946800 Enhancers Primary T helper naive cells fromperipheralblood blood

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