The 2.0 version of rSNPBase

Variant report

Variant rs59986524
Chromosome Location chr6:44622572-44622573
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:53 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:44602400-44624800 Weak transcription Right Atrium heart
2 chr6:44616400-44622600 Enhancers NH-A brain
3 chr6:44617200-44628200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
4 chr6:44617800-44623000 Weak transcription Breast Myoepithelial Primary Cells Breast
5 chr6:44618000-44623000 Weak transcription Hela-S3 cervix
6 chr6:44618400-44622600 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
7 chr6:44618600-44623800 Enhancers Placenta Amnion Placenta Amnion
8 chr6:44619000-44623200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
9 chr6:44619000-44623200 Weak transcription HMEC breast
10 chr6:44619200-44622800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
11 chr6:44619200-44623000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
12 chr6:44619200-44623200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
13 chr6:44619200-44623200 Weak transcription NHEK skin
14 chr6:44619400-44622800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
15 chr6:44619400-44628600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
16 chr6:44619600-44628800 Weak transcription iPS-18 Cell Line embryonic stem cell
17 chr6:44620000-44622800 Weak transcription ES-WA7 Cell Line embryonic stem cell
18 chr6:44620000-44623000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
19 chr6:44620000-44628200 Weak transcription iPS-15b Cell Line embryonic stem cell
20 chr6:44620200-44622800 Weak transcription HUES64 Cell Line embryonic stem cell
21 chr6:44620400-44623800 Enhancers Muscle Satellite Cultured Cells --
22 chr6:44620400-44624000 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
23 chr6:44620800-44623000 Weak transcription ES-I3 Cell Line embryonic stem cell
24 chr6:44620800-44623000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
25 chr6:44620800-44623400 Enhancers Primary hematopoietic stem cells short term culture blood
26 chr6:44620800-44623400 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
27 chr6:44620800-44623600 Enhancers Primary hematopoietic stem cells blood
28 chr6:44621400-44622600 Bivalent Enhancer Fetal Adrenal Gland Adrenal Gland
29 chr6:44621400-44622600 Bivalent Enhancer Fetal Muscle Leg muscle
30 chr6:44621400-44623200 Weak transcription Colonic Mucosa Colon
31 chr6:44621600-44623000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
32 chr6:44621600-44623000 Weak transcription Fetal Intestine Small intestine
33 chr6:44621600-44627800 Weak transcription Esophagus oesophagus
34 chr6:44621800-44622800 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
35 chr6:44621800-44623000 Weak transcription Osteobl bone
36 chr6:44621800-44624000 Enhancers HSMM muscle
37 chr6:44622000-44623000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
38 chr6:44622000-44623200 Weak transcription Psoas Muscle Psoas
39 chr6:44622000-44623200 Weak transcription Rectal Smooth Muscle rectum
40 chr6:44622000-44623400 Weak transcription Ovary ovary
41 chr6:44622200-44622600 Weak transcription Fetal Lung lung
42 chr6:44622200-44622600 Bivalent Enhancer Fetal Muscle Trunk muscle
43 chr6:44622200-44623000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
44 chr6:44622200-44623000 Weak transcription Small Intestine intestine
45 chr6:44622200-44623200 Weak transcription Adipose Nuclei Adipose
46 chr6:44622200-44623200 Weak transcription Spleen Spleen
47 chr6:44622200-44623400 Enhancers HSMMtube muscle
48 chr6:44622200-44623800 Enhancers iPS-20b Cell Line embryonic stem cell
49 chr6:44622200-44624200 Enhancers HUES6 Cell Line embryonic stem cell
50 chr6:44622400-44622600 Enhancers iPS DF 19.11 Cell Line embryonic stem cell

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Last update: Aug 31, 2015