Variant report

Variant	rs2170621
Chromosome Location	chr6:44630251-44630252
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:44626747..44628827-chr6:44629868..44632805,3	K562	blood:
2	chr6:44629819..44632413-chr6:45387343..45390282,3	MCF-7	breast:
3	chr6:44629008..44631084-chr6:44694856..44697069,2	MCF-7	breast:
4	chr6:44628498..44636418-chr6:44638711..44643963,7	MCF-7	breast:
5	chr6:44629363..44631205-chr6:45344522..45347222,2	MCF-7	breast:
6	chr6:44614567..44618121-chr6:44629558..44632152,3	K562	blood:
7	chr6:44629072..44631596-chr6:44697653..44700254,3	MCF-7	breast:
8	chr6:44627669..44630444-chr6:45384279..45386439,2	MCF-7	breast:
9	chr6:44629725..44631733-chr6:44703945..44706239,2	MCF-7	breast:
10	chr6:44628849..44631446-chr6:45923320..45924995,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000196284	Chromatin interaction
ENSG00000271857	Chromatin interaction
ENSG00000124813	Chromatin interaction

rs_ID	r²[population]
rs10498757	1.00[ASN][1000 genomes]
rs16872751	1.00[ASN][1000 genomes]
rs59986524	0.81[AMR][1000 genomes]
rs61516561	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6912535	1.00[ASN][1000 genomes]
rs6935088	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73440447	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73444394	1.00[ASN][1000 genomes]
rs73448343	1.00[ASN][1000 genomes]
rs7742052	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7766901	1.00[ASN][1000 genomes]
rs9296447	1.00[ASN][1000 genomes]
rs9463046	1.00[ASN][1000 genomes]
rs9472372	1.00[ASN][1000 genomes]
rs9472373	1.00[ASN][1000 genomes]
rs9472374	1.00[ASN][1000 genomes]
rs9472375	1.00[ASN][1000 genomes]
rs9472379	1.00[ASN][1000 genomes]
rs9472381	1.00[ASN][1000 genomes]
rs9472384	1.00[ASN][1000 genomes]

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44623600-44630400	Weak transcription	Fetal Lung	lung
2	chr6:44625800-44631200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:44626800-44636800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:44627000-44637400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:44627400-44633200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:44627600-44636600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:44627800-44632400	Enhancers	Muscle Satellite Cultured Cells	--
8	chr6:44627800-44636400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:44628200-44631200	Enhancers	NHDF-Ad	bronchial
10	chr6:44628200-44632000	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr6:44628200-44632600	Enhancers	NH-A	brain
12	chr6:44628200-44633200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:44628200-44636400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:44628400-44631600	Enhancers	Fetal Kidney	kidney
15	chr6:44628400-44632000	Enhancers	HMEC	breast
16	chr6:44628400-44632000	Enhancers	Osteobl	bone
17	chr6:44628400-44632200	Enhancers	H9 Cell Line	embryonic stem cell
18	chr6:44628400-44636000	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr6:44628600-44632000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr6:44628600-44633000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:44628600-44637000	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr6:44628800-44630800	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr6:44628800-44631600	Enhancers	HSMMtube	muscle
24	chr6:44628800-44631800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr6:44628800-44632600	Enhancers	HSMM	muscle
26	chr6:44628800-44633400	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr6:44628800-44636200	Enhancers	Placenta	Placenta
28	chr6:44628800-44637200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr6:44629000-44632400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:44629000-44633600	Enhancers	H1 Cell Line	embryonic stem cell
31	chr6:44629000-44633800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
32	chr6:44629000-44634800	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr6:44629000-44636400	Enhancers	Placenta Amnion	Placenta Amnion
34	chr6:44629200-44630800	Weak transcription	Duodenum Mucosa	Duodenum
35	chr6:44629200-44631000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr6:44629200-44636400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr6:44629400-44632800	Enhancers	NHEK	skin
38	chr6:44629400-44633200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr6:44629800-44631200	Enhancers	Pancreas	Pancrea
40	chr6:44629800-44633000	Enhancers	Fetal Heart	heart
41	chr6:44629800-44635800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr6:44629800-44636600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr6:44630000-44630600	Bivalent Enhancer	Fetal Muscle Leg	muscle
44	chr6:44630000-44631200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr6:44630000-44631200	Enhancers	Fetal Thymus	thymus
46	chr6:44630000-44632000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr6:44630200-44630600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
48	chr6:44630200-44630800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr6:44630200-44630800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
50	chr6:44630200-44630800	Bivalent Enhancer	GM12878-XiMat	blood

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