Variant report

Variant	rs6912535
Chromosome Location	chr6:44774828-44774829
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:44774069..44776397-chr6:44778868..44780744,2	K562	blood:
2	chr6:44772973..44775332-chr6:44779417..44781667,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10498757	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs13436998	1.00[CEU][hapmap];0.84[YRI][hapmap];0.87[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs16872751	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16873056	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2090832	1.00[CHB][hapmap]
rs2170621	1.00[ASN][1000 genomes]
rs28843161	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs59606274	0.94[AFR][1000 genomes]
rs61516561	1.00[ASN][1000 genomes]
rs6935088	1.00[ASN][1000 genomes]
rs73438898	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73440447	1.00[ASN][1000 genomes]
rs73442933	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73443219	0.95[AFR][1000 genomes]
rs73443229	0.95[AFR][1000 genomes]
rs73443286	0.95[AFR][1000 genomes]
rs73444394	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73447433	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73448343	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7742052	1.00[ASN][1000 genomes]
rs7749796	1.00[CHB][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7751298	1.00[CHB][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7766901	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7768241	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9296447	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9296450	0.94[YRI][hapmap]
rs9463046	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9463053	0.93[AFR][1000 genomes]
rs9463056	1.00[CHB][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9472371	1.00[CHB][hapmap]
rs9472372	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9472373	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[YRI][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9472374	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9472375	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9472377	1.00[CHB][hapmap]
rs9472379	1.00[CEU][hapmap];0.81[YRI][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9472381	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9472384	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9472390	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9472391	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9472393	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9472394	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9472395	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9472412	1.00[CHB][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9472413	1.00[CHB][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9472414	0.95[YRI][hapmap]
rs9472421	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9885623	0.95[AFR][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44761800-44776200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:44769000-44775400	Weak transcription	Pancreas	Pancrea
3	chr6:44769200-44776000	Weak transcription	Ovary	ovary
4	chr6:44772200-44775200	Enhancers	Duodenum Mucosa	Duodenum
5	chr6:44772600-44776000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:44772600-44776800	Weak transcription	Primary T cells from cord blood	blood
7	chr6:44773200-44775800	Weak transcription	NH-A	brain
8	chr6:44773200-44776200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:44773400-44775000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:44773400-44775200	Enhancers	Fetal Intestine Large	intestine
11	chr6:44773800-44776200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:44774400-44775000	Enhancers	Liver	Liver
13	chr6:44774600-44775000	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr6:44774600-44775000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:44774600-44775000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:44774600-44775000	Enhancers	Fetal Intestine Small	intestine
17	chr6:44774600-44775000	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr6:44774600-44775000	Enhancers	Sigmoid Colon	Sigmoid Colon
19	chr6:44774600-44775000	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr6:44774600-44775000	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr6:44774800-44775000	Enhancers	Aorta	Aorta
22	chr6:44774800-44775000	Enhancers	Brain Cingulate Gyrus	brain
23	chr6:44774800-44775000	Enhancers	Fetal Muscle Leg	muscle

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