Variant report

Variant	rs7768241
Chromosome Location	chr6:44853723-44853724
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10498757	1.00[ASN][1000 genomes]
rs13436998	0.88[AFR][1000 genomes]
rs16872751	0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16873056	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16873073	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16873103	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2396374	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28843161	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59606274	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6912535	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73438898	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73442933	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73443219	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73443229	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73443286	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73444394	1.00[ASN][1000 genomes]
rs73444966	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73444983	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73447433	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73448343	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7749796	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751298	0.99[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7766901	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9296447	0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9463046	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9463053	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9463056	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9463058	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9472372	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9472373	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9472374	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9472375	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9472379	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9472381	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9472384	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9472390	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9472391	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9472393	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9472394	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9472395	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9472412	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9472413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9472414	0.82[AFR][1000 genomes]
rs9472421	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9472424	1.00[ASN][1000 genomes]
rs9472433	1.00[ASN][1000 genomes]
rs9472434	1.00[ASN][1000 genomes]
rs9472435	1.00[ASN][1000 genomes]
rs9472436	1.00[ASN][1000 genomes]
rs9885623	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885861	chr6:44837356-45043618	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033815	chr6:44845514-44938799	Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44838400-44854200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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