Variant report

Variant	rs9296447
Chromosome Location	chr6:44822936-44822937
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:44817728..44819933-chr6:44820094..44823058,2	K562	blood:
2	chr6:44816641..44819151-chr6:44821596..44823845,2	MCF-7	breast:
3	chr6:44821812..44824546-chr6:44828040..44830649,2	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10498757	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13436998	1.00[CEU][hapmap];0.83[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16872751	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16873056	0.88[YRI][hapmap];0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16873073	0.95[YRI][hapmap];0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16873103	0.94[YRI][hapmap];0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2090832	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2170621	1.00[ASN][1000 genomes]
rs2396374	0.94[YRI][hapmap];0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28843161	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57148952	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59606274	0.96[AFR][1000 genomes]
rs61516561	1.00[ASN][1000 genomes]
rs6912535	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6935088	1.00[ASN][1000 genomes]
rs73438898	0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73440447	1.00[ASN][1000 genomes]
rs73442933	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73443219	0.97[AFR][1000 genomes]
rs73443229	0.97[AFR][1000 genomes]
rs73443286	0.97[AFR][1000 genomes]
rs73444394	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73444966	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73447433	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73448343	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73448344	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73448346	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7742052	1.00[ASN][1000 genomes]
rs7749796	0.95[YRI][hapmap];0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7751298	0.94[YRI][hapmap];0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7766901	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7768241	0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9296450	0.94[YRI][hapmap]
rs9463045	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9463046	1.00[CEU][hapmap];0.84[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9463053	0.95[AFR][1000 genomes]
rs9463056	0.95[YRI][hapmap];0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9463058	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9472371	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9472372	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9472373	1.00[CEU][hapmap];0.80[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9472374	1.00[CEU][hapmap];0.84[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9472375	1.00[CEU][hapmap];0.81[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9472379	1.00[CEU][hapmap];0.81[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9472381	1.00[CEU][hapmap];0.85[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9472384	1.00[CEU][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9472390	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9472391	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9472393	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9472394	0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9472395	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9472412	0.94[YRI][hapmap];0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9472413	0.94[YRI][hapmap];0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9472414	0.95[YRI][hapmap];0.81[AFR][1000 genomes]
rs9472421	0.85[YRI][hapmap];0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9472424	1.00[ASN][1000 genomes]
rs9472427	0.94[YRI][hapmap]
rs9885623	0.97[AFR][1000 genomes]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44818000-44832200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr6:44818400-44823200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:44818400-44823400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:44818400-44823400	Weak transcription	HSMMtube	muscle
5	chr6:44818400-44825800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:44818400-44826400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr6:44818800-44823400	Weak transcription	Fetal Stomach	stomach
8	chr6:44818800-44823600	Weak transcription	HSMM	muscle
9	chr6:44819400-44823200	Weak transcription	Osteobl	bone
10	chr6:44819400-44823400	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr6:44819600-44823000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:44819600-44823200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:44820000-44824600	Enhancers	Fetal Intestine Large	intestine
14	chr6:44820400-44832200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr6:44821600-44824800	Enhancers	Primary T cells from cord blood	blood
16	chr6:44821600-44824800	Enhancers	Fetal Intestine Small	intestine
17	chr6:44822000-44824400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr6:44822200-44823200	Enhancers	Fetal Thymus	thymus
19	chr6:44822200-44824400	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr6:44822400-44824600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr6:44822600-44823000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr6:44822600-44823400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:44822600-44823400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:44822600-44824000	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr6:44822600-44824600	Enhancers	Fetal Heart	heart
26	chr6:44822600-44828400	Enhancers	Fetal Lung	lung
27	chr6:44822800-44823000	Enhancers	Primary T cells fromperipheralblood	blood
28	chr6:44822800-44823000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
29	chr6:44822800-44823200	Enhancers	Brain Germinal Matrix	brain
30	chr6:44822800-44823400	Enhancers	K562	blood
31	chr6:44822800-44824600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
32	chr6:44822800-44824600	Enhancers	Ovary	ovary
33	chr6:44822800-44824800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
34	chr6:44822800-44824800	Enhancers	Fetal Kidney	kidney

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