Variant report

Variant	rs73448343
Chromosome Location	chr6:44786686-44786687
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10498757	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13436998	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16872751	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16873056	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16873073	1.00[ASN][1000 genomes]
rs2090832	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2170621	1.00[ASN][1000 genomes]
rs2396374	1.00[ASN][1000 genomes]
rs28843161	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57148952	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61516561	1.00[ASN][1000 genomes]
rs6912535	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6935088	1.00[ASN][1000 genomes]
rs73438898	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73440447	1.00[ASN][1000 genomes]
rs73442933	1.00[ASN][1000 genomes]
rs73443219	0.81[AFR][1000 genomes]
rs73443229	0.81[AFR][1000 genomes]
rs73443286	0.81[AFR][1000 genomes]
rs73444394	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73447433	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73448344	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73448346	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7742052	1.00[ASN][1000 genomes]
rs7749796	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7751298	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7766901	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7768241	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9296447	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9463045	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9463046	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9463053	0.81[AFR][1000 genomes]
rs9463056	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9463058	1.00[ASN][1000 genomes]
rs9472371	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9472372	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9472373	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9472374	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9472375	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9472379	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9472381	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9472384	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9472390	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9472391	1.00[ASN][1000 genomes]
rs9472393	1.00[ASN][1000 genomes]
rs9472394	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9472395	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9472412	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9472413	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9472421	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9472424	1.00[ASN][1000 genomes]
rs9885623	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1842105	chr6:44783457-44798701	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44777400-44796600	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr6:44779600-44796200	Weak transcription	Primary T cells from cord blood	blood
3	chr6:44779600-44796600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr6:44779600-44796800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr6:44779600-44796800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr6:44780000-44798400	Weak transcription	Dnd41	blood
7	chr6:44784400-44788000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:44785200-44795200	Weak transcription	Aorta	Aorta
9	chr6:44785200-44796800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr6:44785800-44796400	Weak transcription	Primary hematopoietic stem cells	blood
11	chr6:44786200-44797200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links