Variant report

Variant	rs9472384
Chromosome Location	chr6:44817557-44817558
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:44816641..44819151-chr6:44821596..44823845,2	MCF-7	breast:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10498757	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13436998	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16872751	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16873056	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16873073	0.81[YRI][hapmap];1.00[ASN][1000 genomes]
rs16873103	1.00[CHB][hapmap];0.84[YRI][hapmap];1.00[ASN][1000 genomes]
rs2090832	1.00[CHB][hapmap];0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2170621	1.00[ASN][1000 genomes]
rs2396374	1.00[CHB][hapmap];0.84[YRI][hapmap];1.00[ASN][1000 genomes]
rs28843161	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57148952	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59606274	0.84[AFR][1000 genomes]
rs61516561	1.00[ASN][1000 genomes]
rs6912535	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6935088	1.00[ASN][1000 genomes]
rs73438898	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73440447	1.00[ASN][1000 genomes]
rs73442933	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73443219	0.87[AFR][1000 genomes]
rs73443229	0.87[AFR][1000 genomes]
rs73443286	0.87[AFR][1000 genomes]
rs73444394	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73444966	1.00[ASN][1000 genomes]
rs73447433	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73448343	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73448344	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73448346	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7742052	1.00[ASN][1000 genomes]
rs7749796	1.00[CHB][hapmap];0.81[YRI][hapmap];0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7751298	1.00[CHB][hapmap];0.84[YRI][hapmap];0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7766901	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7768241	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9296447	1.00[CEU][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296450	0.84[YRI][hapmap]
rs9463045	0.83[YRI][hapmap];0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9463046	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9463053	0.87[AFR][1000 genomes]
rs9463056	1.00[CHB][hapmap];0.80[YRI][hapmap];0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9463058	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9472371	1.00[CHB][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9472372	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9472373	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9472374	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9472375	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9472377	1.00[CHB][hapmap]
rs9472379	1.00[CEU][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9472380	0.82[AFR][1000 genomes]
rs9472381	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9472390	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9472391	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9472393	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9472394	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9472395	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9472412	1.00[CHB][hapmap];0.84[YRI][hapmap];0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9472413	1.00[CHB][hapmap];0.84[YRI][hapmap];0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9472414	0.80[YRI][hapmap]
rs9472421	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9472424	1.00[ASN][1000 genomes]
rs9885623	0.85[AFR][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44798400-44822800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr6:44808600-44821000	Weak transcription	Primary T cells from cord blood	blood
3	chr6:44817200-44820000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:44817400-44817800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:44817400-44818400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:44817400-44819600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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