Variant report

Variant	rs16872751
Chromosome Location	chr6:44827696-44827697
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10498757	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13436998	1.00[CEU][hapmap];0.84[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16873056	0.88[YRI][hapmap];0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16873073	0.95[YRI][hapmap];0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16873103	1.00[CHB][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2090832	1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2170621	1.00[ASN][1000 genomes]
rs2396374	1.00[CHB][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28843161	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57148952	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59606274	0.96[AFR][1000 genomes]
rs61516561	1.00[ASN][1000 genomes]
rs6912535	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6935088	1.00[ASN][1000 genomes]
rs73438898	0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73440447	1.00[ASN][1000 genomes]
rs73442933	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73443219	0.97[AFR][1000 genomes]
rs73443229	0.97[AFR][1000 genomes]
rs73443286	0.97[AFR][1000 genomes]
rs73444394	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73444966	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73447433	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73448343	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73448344	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73448346	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7742052	1.00[ASN][1000 genomes]
rs7749796	1.00[CHB][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7751298	1.00[CHB][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7766901	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7768241	0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9296447	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296450	0.94[YRI][hapmap]
rs9463045	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9463046	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9463053	0.95[AFR][1000 genomes]
rs9463056	1.00[CHB][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9463058	1.00[CHB][hapmap];0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9472371	1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9472372	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9472373	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9472374	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9472375	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9472377	1.00[CHB][hapmap]
rs9472379	1.00[CEU][hapmap];0.81[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9472381	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9472384	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9472390	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9472391	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9472393	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9472394	0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9472395	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9472412	1.00[CHB][hapmap];0.94[YRI][hapmap];0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9472413	1.00[CHB][hapmap];0.94[YRI][hapmap];0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9472414	0.95[YRI][hapmap];0.81[AFR][1000 genomes]
rs9472421	0.85[YRI][hapmap];0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9472424	1.00[ASN][1000 genomes]
rs9472427	0.94[YRI][hapmap]
rs9472433	1.00[ASN][1000 genomes]
rs9472434	1.00[ASN][1000 genomes]
rs9885623	0.97[AFR][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44818000-44832200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr6:44820400-44832200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:44822600-44828400	Enhancers	Fetal Lung	lung
4	chr6:44823000-44829600	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr6:44823200-44828800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:44823600-44828000	Weak transcription	HSMMtube	muscle
7	chr6:44823800-44836600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:44824600-44833200	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr6:44824600-44833200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr6:44825600-44828000	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr6:44826000-44828600	Enhancers	Fetal Heart	heart
12	chr6:44826000-44831600	Weak transcription	Fetal Intestine Small	intestine
13	chr6:44826200-44827800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr6:44826400-44828400	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr6:44826400-44828400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:44826600-44828000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr6:44827200-44827800	Weak transcription	Brain Germinal Matrix	brain
18	chr6:44827200-44828400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr6:44827200-44828400	Enhancers	Fetal Intestine Large	intestine
20	chr6:44827400-44833000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr6:44827400-44833200	Weak transcription	Primary T cells from cord blood	blood
22	chr6:44827600-44833000	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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