Variant report

Variant	rs59988055
Chromosome Location	chr15:31766673-31766674
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:31753115..31755985-chr15:31766097..31768042,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1077168	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11629536	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11631962	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16956762	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2169020	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2338684	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7183105	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs755811	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8026661	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs898214	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	esv34100	chr15:31496514-31792591	Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv903840	chr15:31589970-31800149	Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv1051589	chr15:31728004-31972706	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv542320	chr15:31728004-31972706	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv469633	chr15:31731003-31904613	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv482330	chr15:31731003-31904613	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv903844	chr15:31736091-31781988	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1046271	chr15:31741255-31795961	Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv903845	chr15:31751664-31939001	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	esv1825374	chr15:31757419-31768482	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	esv1803983	chr15:31760986-31776503	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31758200-31774800	Weak transcription	Gastric	stomach
2	chr15:31758200-31775400	Weak transcription	Pancreas	Pancrea
3	chr15:31763200-31771200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:31765200-31768400	Weak transcription	Esophagus	oesophagus
5	chr15:31765400-31773000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr15:31765400-31773000	Weak transcription	Fetal Heart	heart
7	chr15:31765600-31766800	Enhancers	Fetal Muscle Leg	muscle
8	chr15:31765600-31767000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr15:31765600-31767200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr15:31765600-31767400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr15:31765600-31767800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr15:31765600-31767800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr15:31765600-31768000	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr15:31765600-31770800	Weak transcription	Fetal Brain Male	brain
15	chr15:31765600-31775200	Weak transcription	Brain Anterior Caudate	brain
16	chr15:31765600-31779200	Weak transcription	Brain Angular Gyrus	brain
17	chr15:31765800-31766800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr15:31765800-31766800	Weak transcription	Fetal Lung	lung
19	chr15:31765800-31767200	Enhancers	Primary B cells from cord blood	blood
20	chr15:31765800-31767200	Enhancers	Primary B cells from peripheral blood	blood
21	chr15:31765800-31767400	Enhancers	Primary T cells fromperipheralblood	blood
22	chr15:31765800-31768000	Enhancers	Primary T helper cells fromperipheralblood	blood
23	chr15:31765800-31768000	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr15:31765800-31775400	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr15:31766000-31766800	Enhancers	Primary T cells from cord blood	blood
26	chr15:31766000-31767200	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr15:31766000-31767400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr15:31766000-31768000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr15:31766000-31768000	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr15:31766000-31768000	Weak transcription	HSMMtube	muscle
31	chr15:31766000-31768200	Weak transcription	Brain Cingulate Gyrus	brain
32	chr15:31766000-31776400	Weak transcription	Brain Hippocampus Middle	brain
33	chr15:31766200-31767000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr15:31766200-31767800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr15:31766200-31768200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
36	chr15:31766200-31768200	Weak transcription	Brain Substantia Nigra	brain
37	chr15:31766200-31768600	Weak transcription	Right Atrium	heart
38	chr15:31766200-31770200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr15:31766200-31773600	Weak transcription	Small Intestine	intestine
40	chr15:31766200-31775000	Weak transcription	Left Ventricle	heart
41	chr15:31766400-31767000	Enhancers	GM12878-XiMat	blood
42	chr15:31766400-31767600	Weak transcription	Fetal Kidney	kidney
43	chr15:31766400-31768200	Enhancers	Primary T helper cells PMA-I stimulated	--
44	chr15:31766400-31771000	Weak transcription	Colonic Mucosa	Colon
45	chr15:31766400-31772200	Weak transcription	Lung	lung
46	chr15:31766600-31767400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
47	chr15:31766600-31768000	Weak transcription	Fetal Stomach	stomach
48	chr15:31766600-31771400	Weak transcription	Thymus	Thymus
49	chr15:31766600-31772000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr15:31766600-31772600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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