Variant report

Variant	rs898214
Chromosome Location	chr15:31763862-31763863
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1077168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11629536	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11631962	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16956762	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2169020	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2338684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59988055	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7183105	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs755811	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8026661	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	esv34100	chr15:31496514-31792591	Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv903840	chr15:31589970-31800149	Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv1051589	chr15:31728004-31972706	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv542320	chr15:31728004-31972706	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv469633	chr15:31731003-31904613	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv482330	chr15:31731003-31904613	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv903844	chr15:31736091-31781988	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1046271	chr15:31741255-31795961	Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv903845	chr15:31751664-31939001	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	esv1825374	chr15:31757419-31768482	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	nsv9234	chr15:31757872-31765879	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
14	esv1803983	chr15:31760986-31776503	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31749200-31764000	Weak transcription	Right Atrium	heart
2	chr15:31758200-31764600	Weak transcription	Esophagus	oesophagus
3	chr15:31758200-31764600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr15:31758200-31774800	Weak transcription	Gastric	stomach
5	chr15:31758200-31775400	Weak transcription	Pancreas	Pancrea
6	chr15:31759400-31764200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr15:31760200-31765000	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr15:31760400-31764000	Weak transcription	Primary B cells from cord blood	blood
9	chr15:31760800-31764000	Weak transcription	Duodenum Mucosa	Duodenum
10	chr15:31762600-31764600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr15:31762600-31764600	Enhancers	GM12878-XiMat	blood
12	chr15:31762800-31764800	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr15:31763000-31764000	Enhancers	Fetal Muscle Trunk	muscle
14	chr15:31763000-31764600	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr15:31763000-31765000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr15:31763000-31766000	Enhancers	HSMM	muscle
17	chr15:31763000-31766000	Enhancers	HSMMtube	muscle
18	chr15:31763000-31766200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr15:31763200-31765600	Bivalent Enhancer	Fetal Muscle Leg	muscle
20	chr15:31763200-31765800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr15:31763200-31765800	Enhancers	NH-A	brain
22	chr15:31763200-31766200	Enhancers	NHLF	lung
23	chr15:31763200-31766600	Enhancers	Fetal Stomach	stomach
24	chr15:31763200-31771200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr15:31763400-31764800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr15:31763400-31764800	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr15:31763400-31765600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr15:31763400-31766000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr15:31763400-31766600	Enhancers	Spleen	Spleen
30	chr15:31763600-31764600	Enhancers	HMEC	breast
31	chr15:31763600-31764800	Enhancers	Primary T helper naive cells from peripheral blood	blood
32	chr15:31763600-31764800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
33	chr15:31763600-31765000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
34	chr15:31763600-31765000	Weak transcription	Colonic Mucosa	Colon
35	chr15:31763600-31765200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr15:31763600-31765200	Enhancers	Primary B cells from peripheral blood	blood
37	chr15:31763600-31765200	Enhancers	Placenta Amnion	Placenta Amnion
38	chr15:31763600-31765400	Enhancers	Muscle Satellite Cultured Cells	--
39	chr15:31763600-31765600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr15:31763600-31765600	Enhancers	NHDF-Ad	bronchial
41	chr15:31763600-31766000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr15:31763600-31766200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr15:31763600-31766200	Enhancers	Osteobl	bone
44	chr15:31763800-31764000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr15:31763800-31764000	Enhancers	Fetal Kidney	kidney
46	chr15:31763800-31764000	Enhancers	Lung	lung
47	chr15:31763800-31764200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr15:31763800-31764600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr15:31763800-31764800	Enhancers	Primary T cells from cord blood	blood
50	chr15:31763800-31765000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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